Locus 5969

Sequence ID X_DroMel_CAF1
Location 15,374,996 – 15,375,091
Length 95
Max. P 0.609480
window9694

overview

Window 4

Location 15,374,996 – 15,375,091
Length 95
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 73.07
Mean single sequence MFE -18.22
Consensus MFE -4.40
Energy contribution -4.68
Covariance contribution 0.28
Combinations/Pair 1.17
Mean z-score -1.65
Structure conservation index 0.24
SVM decision value 0.15
SVM RNA-class probability 0.609480
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15374996 95 - 22224390
AUUAAAAUGGGCAAAUAAGUCACAUUGCUC--GACUUAUUGAAAC-----AUUGAAAAAAGAAAGUCUUCAAUUUUAAUGAACAGCAAACUGUU-----------UAAAUUAU-------
.(((((((((((.((((((((.........--)))))))).....-----.((....)).....))))...)))))))(((((((....)))))-----------))......------- ( -16.60)
>DroSec_CAF1 17020 93 - 1
AUUAAAAUGGGCAAAUAAGUCGCAUUGCUCGCGACUUAUUAAAUC-----CUUGAAAUA----AGUAUUCAAUUUCAAUGAGCAGCCAACUGUU-----------UAAAAUAU-------
.(((((...(((.((((((((((.......))))))))))...((-----.(((((((.----........))))))).))...))).....))-----------))).....------- ( -23.90)
>DroSim_CAF1 10370 93 - 1
AUUAAAAUGUGCAAAUAAGUCACAUUGCUCGCGACUUAUUAAAAC-----CUUGAAAUA----AGUAUUCAAUUUCAAUGAGCAGCCAACUGUU-----------UAAAAUAU-------
........((...((((((((.(.......).))))))))...))-----.(((((((.----........)))))))(((((((....)))))-----------))......------- ( -15.90)
>DroEre_CAF1 15195 106 - 1
AUUAAAAUGGGCACAUCAGUCACAUUGCUC--AACUCAUUAAAGC-----AUUAAAACA----AGUAUUUCAUUGCAGUGAGCA---AACUGUUUAAACAUUGUUUAAAAUAUGGCGCUG
........(.((.(((((((....((((((--(.((((...(((.-----(((......----))).)))...)).))))))))---)))))(((((((...)))))))..))))).).. ( -17.00)
>DroYak_CAF1 7049 104 - 1
AUUAAAAUGGGCACAUAAGUCACAUUGCUU--AACUUAUUAUAGGCGAUGAACGAAAGA----AGUAUUCAAUUUCUAUGGGCA---AACUGUUUACACAUUGUUUAACAUAU-------
......((((((......))).((((((((--(........)))))))))......(((----(((.....)))))).((((((---(..((....))..))))))).)))..------- ( -17.70)
>consensus
AUUAAAAUGGGCAAAUAAGUCACAUUGCUC__GACUUAUUAAAAC_____AUUGAAAUA____AGUAUUCAAUUUCAAUGAGCAGC_AACUGUU___________UAAAAUAU_______
.....(((((((......))).))))......................................................(((((....))))).......................... ( -4.40 =  -4.68 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:53 2006