Locus 5968

Sequence ID X_DroMel_CAF1
Location 15,373,738 – 15,373,858
Length 120
Max. P 0.691335
window9693

overview

Window 3

Location 15,373,738 – 15,373,858
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 96.67
Mean single sequence MFE -46.82
Consensus MFE -43.72
Energy contribution -43.96
Covariance contribution 0.24
Combinations/Pair 1.03
Mean z-score -1.21
Structure conservation index 0.93
SVM decision value 0.33
SVM RNA-class probability 0.691335
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15373738 120 + 22224390
UAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGUUUCAAUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAACAGCUGGCGGCGAGUGGAGCGCUGCCGCCUCAUGGCUGCCA
..........(((((....(((((((((((((.((((.........))))...))))....)))))))))........))))).((((((..(((..(((....)))..))).)))))). ( -46.80)
>DroSec_CAF1 15735 120 + 1
AAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGUUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGCCCGGACAUAAUAACAGCUGGCGGCGAGUGGAGCGCUGCCGCCUCAUGGCUGCCA
..........(((((....((((.((((...(((.(((..((((.....))))))).))).)))).))))........))))).((((((..(((..(((....)))..))).)))))). ( -44.60)
>DroSim_CAF1 9059 120 + 1
AAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGUUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAGCAGCUGGCGGCGAGUGGAGCGCUGCCGCCUCAUGGCUGCCA
.....((((.(((((....(((((((((...(((.(((..((((.....))))))).))).))))))))).....)))))))))((((((..(((..(((....)))..))).)))))). ( -51.50)
>DroEre_CAF1 13981 120 + 1
AAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGCUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAACAGCUGGCGGCGAGUGGAACGCUGCCGCCUCAUGGCUGCCA
..........(((((....((((((((((((((....)))))........((....))...)))))))))........))))).(((((((.......)))))))(((....)))..... ( -46.40)
>DroYak_CAF1 5798 120 + 1
AAUUGAGUUUGCUGUGCCGCCGGUCGCCGCAGCUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAACAGCUGGCGGCGAGUGGAACGCUGCCGCCUCAUGGCUGCCA
..........(((((....((((((((.(((((....)))))........((....))....))))))))........))))).(((((((.......)))))))(((....)))..... ( -44.80)
>consensus
AAUCGAGUUCGCUGUGCCGCCGGUCGCUGCAGUUUCAGUUGCAUCAUGAAUGCCUGCAACAAGUGGCCGGACAUAAUAACAGCUGGCGGCGAGUGGAGCGCUGCCGCCUCAUGGCUGCCA
..........(((((....(((((((((((((.((((.........))))...))))....)))))))))........))))).(((((((.......)))))))(((....)))..... (-43.72 = -43.96 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:52 2006