Locus 5965

Sequence ID X_DroMel_CAF1
Location 15,370,773 – 15,370,893
Length 120
Max. P 0.664277
window9687

overview

Window 7

Location 15,370,773 – 15,370,893
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 98.17
Mean single sequence MFE -28.46
Consensus MFE -28.20
Energy contribution -28.00
Covariance contribution -0.20
Combinations/Pair 1.06
Mean z-score -1.18
Structure conservation index 0.99
SVM decision value 0.28
SVM RNA-class probability 0.664277
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15370773 120 + 22224390
UGAAUCGUUUCGCGUUUCGAGUGCUCCUAAUCCGCAACUGGCGCACUCGGCAAUUAAAGUUAAGCAUUCAACCGGCUAAGUAUCUCAAUUUCAGGCUCUUCUCGGGAUUAACUCACUUCU
(((((.((((.(((((((((((((.((............)).)))))))).)))....)).))))))))).((((..(((..(((.......)))..))).))))............... ( -25.50)
>DroSec_CAF1 12816 120 + 1
UGAAUCGUUUCGCGUUUCGAGUGCUCCUAAUCCGCAACUGGUGCACUCGGCAAUUAAAGUUAAGCAUUCACCCGGCUAAGUAUCUCAAUUUCAGGCUCUUCUCGGGAUUAACUCACUUCU
(((((.((((.(((((((((((((.((............)).)))))))).)))....)).)))))))))(((((..(((..(((.......)))..))).))))).............. ( -28.60)
>DroSim_CAF1 5948 120 + 1
UGAAUCGUUUCGCGUUUCGAGUGCUCCUAAUCCGCAACUGGUGCACUCGGCAAUUAAAGUUAAGCAUUCACCCGGCUAAGUAUCUCAAUUUCAGGCUCUUCUCGGGAUUAACUCACUUCU
(((((.((((.(((((((((((((.((............)).)))))))).)))....)).)))))))))(((((..(((..(((.......)))..))).))))).............. ( -28.60)
>DroEre_CAF1 10889 120 + 1
UGAAUCGUUUCGCAUUUCGAGUGCUCCUAAUCCGCAACUGGUGCACUCGGCAAUUAAAGUUAAGCAUUCACCCGGCUAAGUAUCUCAAUUUCAGACUCUUUUCGGGAUUAACUCACUUCU
(((((.((((.(((((((((((((.((............)).)))))))).)))....)).)))))))))(((((..(((..(((.......)))..))).))))).............. ( -30.10)
>DroYak_CAF1 3080 120 + 1
UGAAUCGUUUCGCGUUUCGAGUGCUCCUAAUCCGCAACUGGUGCACUCGGCAAUUAAAGUUAAGCAUUCACCCGGCUAAGUAUCUCAAUUUCAGACUCUUCUCGGGAUUAACUCACUUCU
(((((.((((.(((((((((((((.((............)).)))))))).)))....)).)))))))))(((((..(((..(((.......)))..))).))))).............. ( -29.50)
>consensus
UGAAUCGUUUCGCGUUUCGAGUGCUCCUAAUCCGCAACUGGUGCACUCGGCAAUUAAAGUUAAGCAUUCACCCGGCUAAGUAUCUCAAUUUCAGGCUCUUCUCGGGAUUAACUCACUUCU
(((((.((((.(((((((((((((.((............)).)))))))).)))....)).)))))))))(((((..(((..(((.......)))..))).))))).............. (-28.20 = -28.00 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:46 2006