Locus 5964

Sequence ID X_DroMel_CAF1
Location 15,368,335 – 15,368,427
Length 92
Max. P 0.600593
window9686

overview

Window 6

Location 15,368,335 – 15,368,427
Length 92
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 77.60
Mean single sequence MFE -21.93
Consensus MFE -15.10
Energy contribution -14.73
Covariance contribution -0.38
Combinations/Pair 1.12
Mean z-score -1.57
Structure conservation index 0.69
SVM decision value 0.14
SVM RNA-class probability 0.600593
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15368335 92 + 22224390
CUCG---------------------CAUCCUGCCUCCUUCCUCAUCUCCUCAUAUGCAAAUGCAUGCAAAUCAGGAUACAAGCGGCUUAGUCCUGCCCGCGACUCUGCGACAU
.(((---------------------((...................((((.((.((((......)))).)).)))).....(((((........).)))).....)))))... ( -21.20)
>DroSec_CAF1 1168 106 + 1
CUCGCAUACCGCAUCCCG-------CAUCCUGCCUCCUCCCUCAUCUCCUCAUAUGCAAAUGCAUGCAAAUCAGGAUACAAACGGCUUAGUCCUGCCCGCGACACUGCGACAU
.(((((...(((.....(-------.((((((....................(((((....))))).....)))))).)....(((........))).)))....)))))... ( -22.91)
>DroSim_CAF1 3675 113 + 1
CUCGCAUACCGCAUCCCGCAUUCCGCAUCCUGCCUCCUCCCUCAUCUCCUCAUAUGCAAAUGCAUGCAAAUCAGGAUACAAACGGCUUAGUCCUGCCCGCGACACUGCGACAU
.(((((....((.....))....(((....................((((.((.((((......)))).)).)))).......(((........))).)))....)))))... ( -24.30)
>DroEre_CAF1 8321 84 + 1
--------------------------GACCUGUUC---CCCCCAGCUCCUCAUAUGUAAAUGCAUGCAAAUCAGGAUGCGAACGGCUUAGUCCUGUCCGCGACUCUGCGACAU
--------------------------(((((((((---......((((((.((.((((......)))).)).)))).))))))))....))).((((.(((....))))))). ( -19.30)
>consensus
CUCG_____________________CAUCCUGCCUCCUCCCUCAUCUCCUCAUAUGCAAAUGCAUGCAAAUCAGGAUACAAACGGCUUAGUCCUGCCCGCGACACUGCGACAU
..............................................((((.((.((((......)))).)).)))).......(((........)))((((....)))).... (-15.10 = -14.73 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:45 2006