| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,365,480 – 15,365,587 |
| Length | 107 |
| Max. P | 0.937209 |
| Location | 15,365,480 – 15,365,587 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.30 |
| Mean single sequence MFE | -24.50 |
| Consensus MFE | -20.59 |
| Energy contribution | -20.60 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.84 |
| SVM decision value | 1.26 |
| SVM RNA-class probability | 0.937209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15365480 107 - 22224390 CACAUGUGCAUGAUA----AGUUUGUAUGCGCUCUAUCAAUAACAUUGAUA-ACAUUAUGCAAUCAAGAUAAUUUUCUUUGCAUAUGCAAUCGAUUAACAAUAUUGAUAAAC-------- .....(((((((...----......)))))))..((((((((..((((((.-.(((.((((((...(((......))))))))))))..))))))......))))))))...-------- ( -23.20) >DroSim_CAF1 571 120 - 1 CACAUGUGCAUGAUAUAUGAUUGUAUAUGCGCUUUAUCAAUAUCAUUGAUGAGCAUUGUGCAAUCAAGAUAAUUUCCUUUGCAUAUGCAACCGAUUAACAAUAUUGAUAAACUUGCUGCU .....(((((((.((((....)))))))))))(((((((((((..((((((.((((.((((((....((.....))..))))))))))...).)))))..)))))))))))......... ( -29.10) >DroEre_CAF1 5385 115 - 1 AAAAUGUGUAUGAUA----AGUUUGUGUGCGCUUUAUCAAUUUCAUUGAUGAGUAUUGUGCAAUCUAGAUAAUUUCC-UUGCAUAUGCAACCGAUUAACAAUAUUGAUAAACUUGCUUCU ...(((((((.((..----.(((((..((((((((((((((...)))))))))....)))))...)))))....)).-.)))))))((((...(((((.....)))))....)))).... ( -21.20) >consensus CACAUGUGCAUGAUA____AGUUUGUAUGCGCUUUAUCAAUAUCAUUGAUGAGCAUUGUGCAAUCAAGAUAAUUUCCUUUGCAUAUGCAACCGAUUAACAAUAUUGAUAAACUUGCU_CU .....((((((.(((........)))))))))(((((((((((..(((((..((((.((((((....((.....))..)))))))))).....)))))..)))))))))))......... (-20.59 = -20.60 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:34 2006