| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,361,615 – 15,361,714 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 15,361,615 – 15,361,714 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 87.33 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -17.23 |
| Energy contribution | -18.23 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.78 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15361615 99 - 22224390 UUUUUUUUUGCCAGCGAAUGCGGCGCUAAUUGACGCCACUUUGCACUUAAAGUAAUGGCCUCUCAAAGGAUCCGCAAAAACCCCA--AUACAGUUAACUUU ....(((((((..(((((.(.(((((.....).)))).))))))............(((((.....)))..))))))))).....--.............. ( -20.70) >DroSec_CAF1 11255 97 - 1 U---UUUUUGCCAGCGAAUGUGGC-CGAAUUGACGCCACUUUGCACUUAAAGUAAUGGCCUCUCAAAGGAUCCGCAAAAACCCCAAAAUACAGUUAACUUC .---(((((((..(((((.(((((-.........))))))))))............(((((.....)))..)))))))))..................... ( -20.70) >DroYak_CAF1 11182 98 - 1 U---UUUUUGCCAGCGAAUGUGGCGCUAAUUGACGCCACUUUGCACUUAGAGUAAUGGACUCUCAAAGGUUCCACAAAAACCCCAAAAAAAACCCCACUUU (---((((((...(((((.(((((((.....).)))))))))))....(((((.....)))))....((((.......)))).)))))))........... ( -24.50) >consensus U___UUUUUGCCAGCGAAUGUGGCGCUAAUUGACGCCACUUUGCACUUAAAGUAAUGGCCUCUCAAAGGAUCCGCAAAAACCCCAAAAUACAGUUAACUUU ....(((((((..(((((.((((((........)))))))))))............((..((.....))..)))))))))..................... (-17.23 = -18.23 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:32 2006