Locus 5958

Sequence ID X_DroMel_CAF1
Location 15,354,521 – 15,354,615
Length 94
Max. P 0.936864
window9669

overview

Window 9

Location 15,354,521 – 15,354,615
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 92.16
Mean single sequence MFE -25.44
Consensus MFE -21.40
Energy contribution -22.32
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -1.74
Structure conservation index 0.84
SVM decision value 1.26
SVM RNA-class probability 0.936864
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15354521 94 + 22224390
CAAAGGUCACGGCCAAGGGACCCCAAAUCU-UUGCCAUUUCGCAAAUGGGUCAAUGGCUUUCCGAGCUAUUAUUUCCCCAGGCGAAUCGCACAAA
....(((....)))..((....))......-.(((...(((((...((((..((((((((...)))))))).....)))).)))))..))).... ( -27.60)
>DroSec_CAF1 4174 94 + 1
CAAAGGUCACGGCCAAGGGACCUCAAAUCU-UUGCCAUUUCGCAAAUGGGUCAUUGGCUUUCCGAGCUAUUAUUUCCCCAGGCGAAUCGCACAAA
...(((((.(......).))))).......-.(((...(((((...((((....((((((...)))))).......)))).)))))..))).... ( -25.90)
>DroSim_CAF1 3779 94 + 1
CAAAGGUCACGGCCAAGGGACCUCAAAUCU-UUGCCAUUUCGCAAAUGGGUCAAUGGCUUUCCGAGCUAUUAUUUCCCCAGGCGAAUCGCACAAA
...(((((.(......).))))).......-.(((...(((((...((((..((((((((...)))))))).....)))).)))))..))).... ( -27.60)
>DroEre_CAF1 7842 95 + 1
CAAGGGUCACGGCCAAGGAACCUUAAAUCUUUUGCCAUUUCGCAAAUGGGACAAUGGCUUUCCUUGCUAUUAUUUACCCGGGCGAAUCGCACAAA
..(((((..(......)..)))))........(((...(((((...((((..((((((.......)))))).....)))).)))))..))).... ( -25.30)
>DroYak_CAF1 4335 94 + 1
CAAAGAUCACGGCCGACGGAACUUAAAUCU-UUGCCAUUUCGCAAAUGGGUCAAUGGCUUUCCUUGCUAUCAUUUCCCCAAGCGAAUCGCACAAA
..(((.((.((.....)))).)))......-.(((...(((((...((((..((((((.......))...))))..)))).)))))..))).... ( -20.80)
>consensus
CAAAGGUCACGGCCAAGGGACCUCAAAUCU_UUGCCAUUUCGCAAAUGGGUCAAUGGCUUUCCGAGCUAUUAUUUCCCCAGGCGAAUCGCACAAA
...(((((.(......).))))).........(((...(((((...((((..((((((.......)))))).....)))).)))))..))).... (-21.40 = -22.32 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:31 2006