Locus 5957

Sequence ID X_DroMel_CAF1
Location 15,349,744 – 15,349,839
Length 95
Max. P 0.870539
window9668

overview

Window 8

Location 15,349,744 – 15,349,839
Length 95
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 73.10
Mean single sequence MFE -40.68
Consensus MFE -16.58
Energy contribution -17.24
Covariance contribution 0.66
Combinations/Pair 1.41
Mean z-score -2.13
Structure conservation index 0.41
SVM decision value 0.87
SVM RNA-class probability 0.870539
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15349744 95 + 22224390
CCGCUGGUGGAUUUG---CCGGCGGUAGCAACGGUGG----A--CUGACUGGUGGUUGUUCAUCAGAGUCCAGACUGCCGGGCAGGGACUUGGUGGUAAUGAUG
((((..(.(..((((---((((((((.((....))((----(--((..(((((((....))))))))))))..)))))).))))))..))..))))........ ( -41.00)
>DroVir_CAF1 5262 91 + 1
CA-------UGUUCG------CCGGCGGCUGUUGUUGCUGAUCCAAAGAUGGCGGCUGCUCAUCCGAGUCCAGGCUGCCCGGCAGCGACUUGGUCGUAAUGAUA
..-------...(((------...(((((((((((((((((((....)))(((((((((((....))))...)))))))))))))))))..))))))..))).. ( -37.70)
>DroSim_CAF1 26 95 + 1
CCGCUGGGGGAUUUG---CCGGCGGUAGCAACGGUGG----A--CUGACCGGUGGUUGUUCAUCAGAGUCCAGACUGCCGGGCAGAGACUUGGUGGUGAUGAUG
((((..((...((((---((((((((.((...(((((----(--(.((((...)))))))))))...))....)))))).))))))..))..))))........ ( -39.90)
>DroEre_CAF1 3218 95 + 1
CCGUUGGAGGAUUUG---CCGGUGGCAGCAGCGGUGG----U--GUGACUGGCGGUUGCUCAUCAGAGUCCAGGCUGCCGGGCAGGGACUUGGUGGUAAUGAUG
((......))...((---(((((.(((.((....)).----)--)).)))))))(((((.(((((.(((((..(((....)))..))))))))))))))).... ( -39.20)
>DroYak_CAF1 26 95 + 1
UCGCUGGGGGAUUUG---CCGGUGGCGGCAACGGUGG----A--CUGACUGGCGGUUGUUCAUCAGAGUCCAGGCUGCCGGGCAGGGACUUGGUGGUGAUGAUG
((((..((...((((---((((..(((....)..(((----(--((..(((..((....))..))))))))).))..)).))))))..))..))))........ ( -39.40)
>DroMoj_CAF1 8149 97 + 1
CU-------GGUUCGGUGCCGUCGUCUGCUGUGGUUGCUGCUCCUCCGAUGGCGGCUGCUCAUCGGAGUCCAGGCUGCCCGGCAGCGACUUGGUGGUGAUGAUA
..-------...(((.((((((((.((((((.(((.(((....((((((((((....)).))))))))....))).)))))))))))))..)))).)))..... ( -46.90)
>consensus
CCGCUGG_GGAUUUG___CCGGCGGCAGCAACGGUGG____A__CUGACUGGCGGUUGCUCAUCAGAGUCCAGGCUGCCGGGCAGGGACUUGGUGGUAAUGAUG
(((((((...........))))))).((((((.((................)).)))))).......(((...(((((((((......)))))))))...))). (-16.58 = -17.24 +   0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:30 2006