Locus 5955

Sequence ID	X_DroMel_CAF1
Location	15,348,060 – 15,348,180
Length	120
Max. P	0.997951

overview

Window 4

Location	15,348,060 – 15,348,180
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	93.17
Mean single sequence MFE	-46.80
Consensus MFE	-37.36
Energy contribution	-38.28
Covariance contribution	0.92
Combinations/Pair	1.06
Mean z-score	-2.11
Structure conservation index	0.80
SVM decision value	1.34
SVM RNA-class probability	0.943731
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15348060 120 + 22224390
UCAAACGCCUCCAGUUGCUCCAAGUCCAGGAGCAGAAAGUUGGCGAUGAUCAACAGCACUGGCAUGGCCAUCAGAACGGCCAGGCAAAUGUGCCACGGAUACCAGCUGGAUAUGGCCUCG
......((((((..(((((((.......)))))))..((((((.....(((....((((..((.(((((........))))).))....))))....))).)))))))))...))).... ( -43.50)
>DroPse_CAF1 10766 120 + 1
UCGAAGGCCUCCAGCUGCUCCAGGUCCAGCAGGAGGAAGUUAGCGAUGAUCAGGAGCACGGGCAUGGCCAUCAGCACGGCCAGGCAAAUAUGCCACGGAUACCAGCUGGAGAUGGCCUCG
.(((.((((((((((((((((.((((..((............))...)))).)))))..((...(((((........)))))((((....)))).......)))))))))...))))))) ( -51.40)
>DroSec_CAF1 7015 120 + 1
UCAAACGCCUCCAGUUGCUCCAAGUCCAGGAGCAGGAAGUUGGCGAUGAUCAACAGCACUGGCAUGGCCAUCAGAACGGCCAGGCAAAUGUGCCACGGAUACCAGCUGGAUAUGGCCUCG
......(((((((((((((((.......))))).((..(((((......))))).((((..((.(((((........))))).))....))))........)))))))))...))).... ( -44.80)
>DroYak_CAF1 8439 120 + 1
UCAAACGCCUCCAGUUGCUCCAAGUCCAGGAGCAGAAAGUUGGCGAUGAUCAACAGCACGGGCAUGGCCAUCAGAACGGCCAGGCAAAUAUGCCACGGAUACCAGCUGGAUAUGGCCUCG
......(((((((((((((((.......))))).....((((..(.....)..))))..((...(((((........)))))((((....)))).......)))))))))...))).... ( -41.10)
>DroPer_CAF1 11413 120 + 1
UCGAAGGCCUCCAGCUGCUCCAGGUCCAGCAGGAGGAAGUUGGCGAUGAUCAGGAGCACGGGCAUGGCCAUCAGCACGGCCAGGCAAAUGUGCCACGGAUACCAGCUGGAGAUGGCCUCG
.(((.((((((((((((.(((..(.(((((........))))))........(..(((((.((.(((((........))))).))...)))))..))))...))))))))...))))))) ( -53.20)
>consensus
UCAAACGCCUCCAGUUGCUCCAAGUCCAGGAGCAGGAAGUUGGCGAUGAUCAACAGCACGGGCAUGGCCAUCAGAACGGCCAGGCAAAUGUGCCACGGAUACCAGCUGGAUAUGGCCUCG
......((((((((((((.((((.(((.......)))..)))).)...(((....(((((.((.(((((........))))).))...)))))....)))..))))))))...))).... (-37.36 = -38.28 +   0.92)

alignment

secondary structure

dotplot

Window 5

Location	15,348,060 – 15,348,180
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	93.17
Mean single sequence MFE	-49.10
Consensus MFE	-42.72
Energy contribution	-42.64
Covariance contribution	-0.08
Combinations/Pair	1.10
Mean z-score	-2.30
Structure conservation index	0.87
SVM decision value	2.97
SVM RNA-class probability	0.997951
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15348060 120 - 22224390
CGAGGCCAUAUCCAGCUGGUAUCCGUGGCACAUUUGCCUGGCCGUUCUGAUGGCCAUGCCAGUGCUGUUGAUCAUCGCCAACUUUCUGCUCCUGGACUUGGAGCAACUGGAGGCGUUUGA
(((((((...(((((.(((((((.(..((((....((.(((((((....))))))).))..))))..).)))....))))......((((((.......)))))).)))))))).)))). ( -47.70)
>DroPse_CAF1 10766 120 - 1
CGAGGCCAUCUCCAGCUGGUAUCCGUGGCAUAUUUGCCUGGCCGUGCUGAUGGCCAUGCCCGUGCUCCUGAUCAUCGCUAACUUCCUCCUGCUGGACCUGGAGCAGCUGGAGGCCUUCGA
(((((((...((((((((((((....((((....)))).((((((....)))))))))))...(((((.(.((...((............))..)).).)))))))))))))))).))). ( -52.20)
>DroSec_CAF1 7015 120 - 1
CGAGGCCAUAUCCAGCUGGUAUCCGUGGCACAUUUGCCUGGCCGUUCUGAUGGCCAUGCCAGUGCUGUUGAUCAUCGCCAACUUCCUGCUCCUGGACUUGGAGCAACUGGAGGCGUUUGA
(((((((...(((((.(((((((.(..((((....((.(((((((....))))))).))..))))..).)))....))))......((((((.......)))))).)))))))).)))). ( -47.70)
>DroYak_CAF1 8439 120 - 1
CGAGGCCAUAUCCAGCUGGUAUCCGUGGCAUAUUUGCCUGGCCGUUCUGAUGGCCAUGCCCGUGCUGUUGAUCAUCGCCAACUUUCUGCUCCUGGACUUGGAGCAACUGGAGGCGUUUGA
(((((((...(((((.(((((((.(..((((....((.(((((((....))))))).))..))))..).)))....))))......((((((.......)))))).)))))))).)))). ( -46.20)
>DroPer_CAF1 11413 120 - 1
CGAGGCCAUCUCCAGCUGGUAUCCGUGGCACAUUUGCCUGGCCGUGCUGAUGGCCAUGCCCGUGCUCCUGAUCAUCGCCAACUUCCUCCUGCUGGACCUGGAGCAGCUGGAGGCCUUCGA
(((((((...(((((((((.(((.(..((((....((.(((((((....))))))).))..))))..).))))....(((...(((.......)))..)))..)))))))))))).))). ( -51.70)
>consensus
CGAGGCCAUAUCCAGCUGGUAUCCGUGGCACAUUUGCCUGGCCGUUCUGAUGGCCAUGCCCGUGCUGUUGAUCAUCGCCAACUUCCUGCUCCUGGACUUGGAGCAACUGGAGGCGUUUGA
(((((((...(((((.(((((((.(..((((....((.(((((((....))))))).))..))))..).)))....))))......((((((.......)))))).)))))))).)))). (-42.72 = -42.64 +  -0.08)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:27 2006