Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,347,811 – 15,347,902 |
Length | 91 |
Max. P | 0.636555 |
Location | 15,347,811 – 15,347,902 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.80 |
Mean single sequence MFE | -36.03 |
Consensus MFE | -18.35 |
Energy contribution | -18.08 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.18 |
Mean z-score | -1.80 |
Structure conservation index | 0.51 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636555 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15347811 91 - 22224390 ACCAGC---------AGCAGGA---UCAG------GAGG---------CGUCGAA-UUUCAUCCAGGAGAUCAAGUGGUUUCAGGACUAUCAUGUGGAAA-UCUAUCUGGAUCUGCUGCU ...(((---------((((((.---((((------((((---------..((.(.-.....(((..((((((....)))))).)))........).))..-))).))))).))))))))) ( -30.64) >DroPse_CAF1 10499 112 - 1 ACCAGGCCGAGUCGGAGGAGGAGUCGCAG------GAGGAGGGCGGCUCCUCGUA-UAUCUUUGAGGAGAUCAAGUGGUUCCACGACUACCACGUGGAGA-UCUACCUGGAUCUUCUGCU ....(((.(((....(.((((((((((..------.......)))))))))).).-...)))..((((((((..(((((((((((.......))))))).-.))))...))))))))))) ( -44.20) >DroSec_CAF1 6763 92 - 1 ACCAGC---------AGCAGGA---UCAG------GAGGA--------CGUCGAACUUUCAUCCAGGAGAUCA-GUGGUUCCAGGACUAUCACGUGGGAAUUCUAUCUG-AUCUGCUGCU ...(((---------(((((.(---((((------(.(((--------..((((....))..(((.(.(((..-..((((....))))))).).)))))..))).))))-)))))))))) ( -32.10) >DroYak_CAF1 8184 97 - 1 ACCAGC---------AGCAGGA---UCAGGAUCAGGAGG---------CGUCGAA-UUUCAUUCAGGAGAUCAAGUGGUUCCAGGACUAUCAUGUGGAAA-UCUAUCUGGAUCUGCUGCU ...(((---------((((((.---((((.....((((.---------((.(..(-((((......)))))...))).))))...........((((...-.)))))))).))))))))) ( -29.00) >DroPer_CAF1 11146 112 - 1 ACCAGGCCGAGUCGGAGGAGGAGUCGCAG------GAGGAGGGCGGCUCCUCGUA-UAUCUUUGAGGAGAUCAAGUGGUUCCACGACUACCACGUGGAGA-UCUACCUGGAUCUUCUGCU ....(((.(((....(.((((((((((..------.......)))))))))).).-...)))..((((((((..(((((((((((.......))))))).-.))))...))))))))))) ( -44.20) >consensus ACCAGC_________AGCAGGA___UCAG______GAGGA________CGUCGAA_UUUCAUUCAGGAGAUCAAGUGGUUCCAGGACUAUCACGUGGAAA_UCUAUCUGGAUCUGCUGCU ...............((((((..............((.(((.....))).)).........((((((((((((.(((((.........))))).)))....))).))))))))))))... (-18.35 = -18.08 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:25 2006