| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,341,902 – 15,342,015 |
| Length | 113 |
| Max. P | 0.998649 |
| Location | 15,341,902 – 15,342,015 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.61 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -26.54 |
| Energy contribution | -26.54 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.94 |
| SVM decision value | 3.17 |
| SVM RNA-class probability | 0.998649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15341902 113 + 22224390 UCUCAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCUAAGCCUAAAUA--UGAAACACUCGGAAUUUCAGUUGGUAUCGACUUUUUUGAAUUGCAUUUGAUCACCAUAAGCG-----CAA ((..((((((..(((((((((((.(((((((((...............--.......))))))))))))))))))))..))))))..)).((((.((((.......)))).)-----))) ( -28.25) >DroGri_CAF1 23625 111 + 1 UCUCAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCAAUGCCAA-AUA--UGAAACACUCGGAAUUUCAGUUGGUAUCGACUUUUUUGAAUUGCAUUUUAUCACCA-AAUCG-----CAA ((..((((((..(((((((((((.(((((((((.((...))((.-...--)).....))))))))))))))))))))..))))))..)).((((((((.......)-))).)-----))) ( -28.50) >DroWil_CAF1 22674 115 + 1 UCUCAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCUAUGCCUAGAUAUUUGAAACACUCGGAAUUUCAGUUGGUAUCGACUUUUUUGAAUUGCAUUUAAUCACCAAAAAAA-----AAA ((..((((((..(((((((((((.(((((((((........................))))))))))))))))))))..))))))..)).......................-----... ( -26.66) >DroMoj_CAF1 27219 111 + 1 UCUCAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCAAUGCCCA-AUA--UGAAACACUCGGAAUUUCAGUUGGUAUAUACUUUUUUGAAUUGCAUUUUAUCACCA-AAGCG-----CAA ((..(((((((.(((((((((((.(((((((((...........-...--.......)))))))))))))))))))).)))))))..)).((((.((((......)-))).)-----))) ( -30.10) >DroAna_CAF1 673 118 + 1 UCUUAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCUAUGCCUGAUUA--UGAAACACUCGGAAUUUCAGUUGGUAUCGACUUUUUCGAAUUGCAUUUUAUCACCAAAAACUACCUAAAA ((..((((((..(((((((((((.(((((((((.(.((((......))--))...).))))))))))))))))))))..))))))..))............................... ( -27.10) >DroPer_CAF1 840 111 + 1 UCUCAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCUAAGC-AAGAUA--UGAAACACUCGGAAUUUCAGUUGGUAUCGACUUUUUUGAAUUGCAUUUUAUCACCA-AAGCG-----CAA ((..((((((..(((((((((((.(((((((((.(.....(-(.....--))...).))))))))))))))))))))..))))))..)).((((.((((......)-))).)-----))) ( -29.60) >consensus UCUCAAAGGUAAAUAUCAGCUGGUAAUUCUGGGAGCUAUGCCUA_AUA__UGAAACACUCGGAAUUUCAGUUGGUAUCGACUUUUUUGAAUUGCAUUUUAUCACCA_AAGCG_____CAA ((..((((((..(((((((((((.(((((((((........................))))))))))))))))))))..))))))..))............................... (-26.54 = -26.54 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:18 2006