| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,340,546 – 15,340,652 |
| Length | 106 |
| Max. P | 0.570268 |
| Location | 15,340,546 – 15,340,652 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 93.21 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -25.65 |
| Energy contribution | -25.99 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.570268 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15340546 106 + 22224390 AAUUGCCAUUCCACCCACUCCAUUC---CGCCGCCGGCGGAAUCGGACCAUGCAAAUUGCCGUCCAUAUUUCCGCAUGCCUGGCAGUUCGUCUUAUCGCCAGUUGGCAA ..((((((..........(((((((---((((...)))))))).)))....((.((((((((..(((........)))..)))))))).))............)))))) ( -33.10) >DroSim_CAF1 1350 106 + 1 AAUUGCCAUUCCACCCACUCCAUCC---CGCCGCCGACGGAAUCGGACCAUGCAAAUUGCCAUCCAUAUUUCCGCAUGCCUGGCAGCUCGUCUUAUCGCCAGCUGGCAA ..(((((..................---.(((((...(((((..(((....((.....))..)))....)))))...))..)))((((.((......)).))))))))) ( -25.70) >DroYak_CAF1 1380 109 + 1 CAUUGCCAUUUCACCCACUGCAUCCCACCGCCGCCGGCGGAAUCGGACCAUGCAAAUUGCCAUCCAUAUUUCCGCAUGCCUGGCAGCUCGUCUUAUCGCCAGCUGGCAA ..((((((..........(((((((..(((((...)))))....)))...))))...(((((..(((........)))..)))))(((.((......)).))))))))) ( -30.70) >consensus AAUUGCCAUUCCACCCACUCCAUCC___CGCCGCCGGCGGAAUCGGACCAUGCAAAUUGCCAUCCAUAUUUCCGCAUGCCUGGCAGCUCGUCUUAUCGCCAGCUGGCAA ..((((((........................((..((((((..(((....((.....))..)))....))))))..))(((((.............))))).)))))) (-25.65 = -25.99 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:15 2006