Locus 5946

Sequence ID X_DroMel_CAF1
Location 15,339,090 – 15,339,210
Length 120
Max. P 0.566681
window9645

overview

Window 5

Location 15,339,090 – 15,339,210
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 86.94
Mean single sequence MFE -37.40
Consensus MFE -24.13
Energy contribution -24.70
Covariance contribution 0.57
Combinations/Pair 1.17
Mean z-score -2.50
Structure conservation index 0.65
SVM decision value 0.07
SVM RNA-class probability 0.566681
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15339090 120 + 22224390
GAUAUCCAGUCCAGAAAAAACUCCCGUAGAUAGCGAGCUUCUGGCCAAAAUGGAGCAAAAGGAGCAGGAAUACUUACAAUUGCAGGAGCAGUUGGCCUUCGCCAAAACGGAACUGGACAA
........((((((.........((((.....((((((((((.(((......).))...))))))(((........(((((((....))))))).)))))))....))))..)))))).. ( -35.30)
>DroSec_CAF1 43694 120 + 1
GAUAUCCAGUCCAGAAAAAACUGCCCUGGAUAGCGAGCUUCUGGCCAAAAUGGAGCAAAAGGAGCAGGAACACUUCCAAUUGCAGGAGCAGUUGGCCUUCGCCAAAACGGAACUAGAAAA
..(((((((..(((......)))..)))))))((((((((((.(((......).))...))))))(((.......((((((((....))))))))))))))).................. ( -38.31)
>DroEre_CAF1 19419 120 + 1
GAAGUCUAGUCCGGAAAAAUCUCCCCUGGACAGCGAGCUACUUGCUAAAAUAGAGCAGAAGGAGCAGGAAUACUUGCUGUUGCAGGAGCAGUUGGCCUCCGCCAAAACGGAAGUGGCCAA
....((((((((((...........))))))((((((...))))))....))))((((....((((((....)))))).))))........((((((((((......))))...)))))) ( -38.60)
>consensus
GAUAUCCAGUCCAGAAAAAACUCCCCUGGAUAGCGAGCUUCUGGCCAAAAUGGAGCAAAAGGAGCAGGAAUACUUACAAUUGCAGGAGCAGUUGGCCUUCGCCAAAACGGAACUGGACAA
....(((.((((((...........)))))).((((((((((.(((......).))...))))))...........(((((((....)))))))....))))......)))......... (-24.13 = -24.70 +   0.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:10 2006