Locus 5944

Sequence ID X_DroMel_CAF1
Location 15,337,708 – 15,337,828
Length 120
Max. P 0.518383
window9641

overview

Window 1

Location 15,337,708 – 15,337,828
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.83
Mean single sequence MFE -48.48
Consensus MFE -30.79
Energy contribution -30.85
Covariance contribution 0.06
Combinations/Pair 1.21
Mean z-score -1.46
Structure conservation index 0.64
SVM decision value -0.03
SVM RNA-class probability 0.518383
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15337708 120 + 22224390
AAUGAACAGCUAAAUGUCUCGCUGGAGGAGCUGGACUCGCAGCAUGAGCUGGCCAUGCGGGAUGUGCUCGAGCACAAGACGCAGCUGGCUGGUCAGGUGGCGAGUCUCAAACAAUUACAG
..(((.(((((.....((((....)))))))))(((((((.((.(((.(..((((((((...(((((....)))))...))))..))))..)))).)).))))))))))........... ( -50.10)
>DroPse_CAF1 25763 120 + 1
AACGCACAGUUGAACGCCUCGUUGGAGGAGCUGGACGCCCAGCACGAGCUGGCCAUGCGGGAUGUGCUGGGGCGCAAAGAGCAGCUGCAGCUGCAGGUGGGGGAGCUGAGGCAGCGGCAG
...((.(((((.....((((....)))))))))(.(((((((((((..((.((...)).)).)))))).)))))).....))..((((.(((((.(((......)))...))))).)))) ( -49.90)
>DroEre_CAF1 18040 120 + 1
AACGCACAGCUCAAUGCCUCGCUGGAGGAGUUGGACUCGCAACAUGAGUUGGCCAUGCGGGAUGUGCUGGAGCACAAGACGCAGCUGGCGGGUCAGGUGGCGAGUCUGAAGCAAUUGCAG
...(((..(((((((.((((....)))).))))(((((((.((.(((.((.((((((((...(((((....)))))...))))..)))).))))).)).)))))))...)))...))).. ( -50.70)
>DroYak_CAF1 18540 120 + 1
AAUGCACAGCUGAAUGCCUCGCUGGAGGAGCUGGACUCGCAGCAUGAGCUGGCCAUGCAGGAUGUGCUGGAGCACAAGACGCAGCUGGCGGGUCAGGUGGCGAAUCUCAAGCAGUUGCAG
..(((((((((.....((((....)))))))))((.((((.((.(((.((.(((((((....(((((....)))))....)))..)))).))))).)).)))).)).........)))). ( -44.40)
>DroAna_CAF1 41040 120 + 1
AACCGGCAGCUGAAUGCCUCGCUGGAGGAGCUGGACUCCCAGCACGAACUGGCCAUGCAGGACGUCCUUAAGCACAAGUCCGAGCUGACCGGCCAGGUGGCCCAGCUGAAGCAGAUGCAG
......((((((...(((.((((((((........)).))))).....((((((...(((..((..(((......)))..))..)))...))))))).))).))))))..((....)).. ( -45.90)
>DroPer_CAF1 26594 120 + 1
AACGCACAGUUGAACGCCUCGUUGGAGGAGCUGGACGCCCAGCACGAGCUGGCCAUGCGGGAUGUGCUGGGGCGCAAAGAGCAGCUGCAGCUGCAGGUGGGGGAGCUGAGGCAGCGGCAG
...((.(((((.....((((....)))))))))(.(((((((((((..((.((...)).)).)))))).)))))).....))..((((.(((((.(((......)))...))))).)))) ( -49.90)
>consensus
AACGCACAGCUGAAUGCCUCGCUGGAGGAGCUGGACUCCCAGCACGAGCUGGCCAUGCGGGAUGUGCUGGAGCACAAGACGCAGCUGGCGGGUCAGGUGGCGAAGCUGAAGCAGUUGCAG
......(((((.....((((....)))).((((......))))...)))))(((((((....(((((....)))))....))..((((....)))))))))................... (-30.79 = -30.85 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:06 2006