| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,336,998 – 15,337,090 |
| Length | 92 |
| Max. P | 0.936645 |
| Location | 15,336,998 – 15,337,090 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 67.18 |
| Mean single sequence MFE | -24.09 |
| Consensus MFE | -11.27 |
| Energy contribution | -11.63 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.47 |
| SVM decision value | 1.25 |
| SVM RNA-class probability | 0.936645 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15336998 92 + 22224390 ACCCACCUCCACCAUCU-UCACCAACUCCUUCUGGCCCCUUACCCAC--CUGCCAUUAGCGUCUGCCAAUUGACCUGGUUUGCUAAUGAGUCA-----------AA------- .................-......((((.....(((...........--..)))(((((((...((((.......)))).)))))))))))..-----------..------- ( -15.72) >DroPse_CAF1 24758 109 + 1 ---CACCACCGCCGUGCCGCAGUCCCCCCAUUUG-CUCUGCCCCGGCCGUAGCCAUUAGCGUCUGCCAAUUGACCUGGUUUGCUGAUGAGCUAGCCAUGUUUCAGAGCGGGGC ---.......((......)).....((((....(-(((((....(((..((((((((((((...((((.......)))).)))))))).)))))))......)))))))))). ( -38.40) >DroSec_CAF1 41562 91 + 1 ACCCACCUCCACCAUCU-CCAGCACCUCCUCCUG-CCCCUUACCCAC--CUGCCAUUAGCGUCUGCCAAUUGACCUGGUUUGCUAAUGAGUCG-----------AA------- .................-...(((........))-)...........--(.((((((((((...((((.......)))).)))))))).)).)-----------..------- ( -15.50) >DroSim_CAF1 18055 91 + 1 ACCCACCUCCACCAUCU-CCAGCACCUCCUCCUG-CCCCUUACCCAC--CUGCCAUUAGCGUCUGCCAAUUGACCUGGUUUGCUAAUGAGUCG-----------AA------- .................-...(((........))-)...........--(.((((((((((...((((.......)))).)))))))).)).)-----------..------- ( -15.50) >DroEre_CAF1 17305 88 + 1 ACCCACCUCCUCCGCCU-CCUCCACC---CCCUG-CCCCUUCUCCGC--CGGCCAUUAGCGGCUGCCAAUUGACCUGGUUUGCUAAUGAGCCA-----------AG------- .................-........---.....-............--.((((((((((((..((((.......))))))))))))).))).-----------..------- ( -19.70) >DroAna_CAF1 39968 96 + 1 -CCCAGCCCCUCUAUAG-GUGCCACCCCCUCUGG-GUGACGACGCCC--CUGCCAUUAGCGUCUACCAAUUGACCUGGUUUUU-CCUCCCCCA-----------GAGGGGGGC -....((.(((....))-).))..((((((((((-(.((.(((((..--.........))))).((((.......))))....-..)).))))-----------))))))).. ( -39.70) >consensus ACCCACCUCCACCAUCU_CCACCACCUCCUCCUG_CCCCUUACCCAC__CUGCCAUUAGCGUCUGCCAAUUGACCUGGUUUGCUAAUGAGCCA___________AA_______ ...................................................((((((((((...((((.......)))).)))))))).))...................... (-11.27 = -11.63 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:05 2006