Locus 5942

Sequence ID X_DroMel_CAF1
Location 15,334,964 – 15,335,054
Length 90
Max. P 0.988949
window9638 window9639

overview

Window 8

Location 15,334,964 – 15,335,054
Length 90
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 92.81
Mean single sequence MFE -21.90
Consensus MFE -20.57
Energy contribution -21.23
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.54
Structure conservation index 0.94
SVM decision value 0.12
SVM RNA-class probability 0.593537
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15334964 90 + 22224390
AUUUGCACAAAUACACUAUCUUCGGCAAACCUGACUCGCUUAUUUGACUGGCAUAAAGUCUU--UACUGGGAAGUUAGUGUAUUCGAUACUU-
.......(.(((((((((.((((((....)).((((.(((.........)))....))))..--......)))).))))))))).)......- ( -19.30)
>DroSec_CAF1 39642 92 + 1
AUUUGCACAAAUACACUAUCUUCGGCAAACCUGACUCGCUUAUUUGACUGGCAUAGAGUCUUUUUCGUGGGAAGUUAGUGUAUGCGAUAAGU-
..(((((....(((((((.((((((....)).((((((((.........)))...)))))..........)))).)))))))))))).....- ( -23.90)
>DroSim_CAF1 16323 93 + 1
AUUUGCACAAAUACACUAUCUUCGGCAAACCUGACUCGCUUAUUUGACUGGCAUAGAGUCUUAUUCUUGGGAAGUUAGUGUAUUCGAUAAGUA
.......(.(((((((((.((((((....)).((((((((.........)))...)))))..........)))).))))))))).)....... ( -22.50)
>consensus
AUUUGCACAAAUACACUAUCUUCGGCAAACCUGACUCGCUUAUUUGACUGGCAUAGAGUCUU_UUCCUGGGAAGUUAGUGUAUUCGAUAAGU_
.......(.(((((((((.((((((....)).((((((((.........)))...)))))..........)))).))))))))).)....... (-20.57 = -21.23 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 15,334,964 – 15,335,054
Length 90
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 92.81
Mean single sequence MFE -24.53
Consensus MFE -23.42
Energy contribution -23.53
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.94
Structure conservation index 0.95
SVM decision value 2.14
SVM RNA-class probability 0.988949
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15334964 90 - 22224390
-AAGUAUCGAAUACACUAACUUCCCAGUA--AAGACUUUAUGCCAGUCAAAUAAGCGAGUCAGGUUUGCCGAAGAUAGUGUAUUUGUGCAAAU
-..(((.(((((((((((.((((......--..(((((...((...........))))))).((....)))))).)))))))))))))).... ( -26.30)
>DroSec_CAF1 39642 92 - 1
-ACUUAUCGCAUACACUAACUUCCCACGAAAAAGACUCUAUGCCAGUCAAAUAAGCGAGUCAGGUUUGCCGAAGAUAGUGUAUUUGUGCAAAU
-.......((((((((((.((((..........(((((...((...........))))))).((....)))))).))))))....)))).... ( -22.40)
>DroSim_CAF1 16323 93 - 1
UACUUAUCGAAUACACUAACUUCCCAAGAAUAAGACUCUAUGCCAGUCAAAUAAGCGAGUCAGGUUUGCCGAAGAUAGUGUAUUUGUGCAAAU
.......(((((((((((.((((....((((..(((((...((...........)))))))..))))...)))).)))))))))))....... ( -24.90)
>consensus
_ACUUAUCGAAUACACUAACUUCCCAAGAA_AAGACUCUAUGCCAGUCAAAUAAGCGAGUCAGGUUUGCCGAAGAUAGUGUAUUUGUGCAAAU
.......(((((((((((.((((..........(((((...((...........))))))).((....)))))).)))))))))))....... (-23.42 = -23.53 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:04 2006