Locus 5940

Sequence ID X_DroMel_CAF1
Location 15,332,115 – 15,332,231
Length 116
Max. P 0.619239
window9634

overview

Window 4

Location 15,332,115 – 15,332,231
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 89.19
Mean single sequence MFE -34.38
Consensus MFE -26.62
Energy contribution -28.38
Covariance contribution 1.76
Combinations/Pair 1.03
Mean z-score -1.56
Structure conservation index 0.77
SVM decision value 0.17
SVM RNA-class probability 0.619239
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15332115 116 - 22224390
AGAUAAAGACCGCGCUGGGUGGGGAGAUAGCAGCGACGGGGUUAAUGGAUAAAAUGGUAAGACAUUUAUCAUGACAGCCGUACAUAACCUCACUCGGCGGUGGGAUGGAUGU----GGGU
..((..(..(((((((((((((((.(....)....((((.((((...((((((.((......)))))))).))))..))))......))))))))))).))))..)..))..----.... ( -37.10)
>DroSec_CAF1 36788 116 - 1
AGAUAAAGACCGCGCUGGGUGGGGAGAUAUCAGCGACGGGGUUAAUGGAUAAAAUGGUAAGACAUUUAUCAUGACAGCCGUGCAUAACCUCACUCGGCGGUGGGAUGGAUGU----GGGU
..((..(..(((((((((((((((.(....).((.((((.((((...((((((.((......)))))))).))))..))))))....))))))))))).))))..)..))..----.... ( -40.90)
>DroSim_CAF1 13481 119 - 1
AGAUAAAGACCGCGCUGGGUGGGUAGAUAUCAGCGACGGGGUUAAUGGAUAAAAUGGUAAGACAUUUAUCAUGACAGCCGUGCAUAACCUCACUCGGCGGUGGGAUGGAUGU-GGUGGGU
..((..(..(((((((((((((((.(....).((.((((.((((...((((((.((......)))))))).))))..))))))...))).)))))))).))))..)..))..-....... ( -37.90)
>DroEre_CAF1 12533 117 - 1
AGAUAAAAACCGGGCUGUAUGGGGAGAUAGCGCCGACGGGUUUAAUGGAUAAAAUGGAAAGACAUUUAUCAUGGCAGCCGUACAUAACCUCACUCGA---UGGGAUGGAUGGACGUGGAU
.........(((((((((.(((.(......).)))............((((((.((......))))))))...))))))((.(((...((((.....---))))....))).)).))).. ( -25.10)
>DroYak_CAF1 12996 114 - 1
AGAUAAAGACCGAUCUGGGUGGGGAGAUAGCACCGACGGGGUUAAUGGAUAAAAUGGAAAGACAUUUAUCAUGGCAGCCGUACAUAACCUCACUCGG---UGAGUUGGAUGG---UGGGU
.........(((((((((((((((...((((.((....))))))(((((((((.((......))))))))((((...)))).)))..))))))))))---...)))))....---..... ( -30.90)
>consensus
AGAUAAAGACCGCGCUGGGUGGGGAGAUAGCAGCGACGGGGUUAAUGGAUAAAAUGGUAAGACAUUUAUCAUGACAGCCGUACAUAACCUCACUCGGCGGUGGGAUGGAUGU___UGGGU
.........(((((((((((((((.(....)....((((.((((...((((((.((......)))))))).))))..))))......))))))))))).))))................. (-26.62 = -28.38 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:00 2006