Locus 5937

Sequence ID X_DroMel_CAF1
Location 15,327,566 – 15,327,681
Length 115
Max. P 0.645704
window9630

overview

Window 0

Location 15,327,566 – 15,327,681
Length 115
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 76.39
Mean single sequence MFE -35.78
Consensus MFE -10.07
Energy contribution -11.95
Covariance contribution 1.88
Combinations/Pair 1.19
Mean z-score -1.80
Structure conservation index 0.28
SVM decision value 0.23
SVM RNA-class probability 0.645704
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15327566 115 - 22224390
UGGGUGUUGGUGGUGCUGCGUAAUUACUUAA---AAGGGGGUGGUGGUGGCAGUCGGUGGGGUGUAGGUGGUAAACGGAGCCAUAUACAACUGACCUAGAGCCACUAGCCAACAAGCC
((...((((((((((((((...(((((((..---....)))))))....))))).(((.((.((((.(((((.......))))).)))).)).)))....)))))))))...)).... ( -40.40)
>DroSec_CAF1 32389 94 - 1
UGGGUG--GCUGGUGCUGCGUAAUUGCUUAA---AGGGGGAUGGUGGUGG------------------GGGUAAACGGAGCCAUAUACACCUGACCUAGAGCCACCAGCCAAC-AGUC
((..((--((((((((((((....)))....---..(((...((((....------------------.(((.......))).....))))...)))..)).))))))))).)-)... ( -34.50)
>DroSim_CAF1 8146 94 - 1
UGGGUG--GUUGGUGCUGCGUAAUUGCCUAA---AGGGGGAUGGUGGUGG------------------GGGUAAACGGAGCCAUAUACACCUGACCUAGAGCCACCAGCCACC-AGUC
..((((--((((((((((((....)))....---..(((...((((....------------------.(((.......))).....))))...)))..)).)))))))))))-.... ( -37.70)
>DroEre_CAF1 8194 92 - 1
UGGGUG--GU----GCUGCGUAAUUGCUAAA---AAGGGGGUGG---UGGCAGUC-------------GGGGGCACGGAGCCAUAUACACCUGGCCUAGAGCCACUAGCCACU-AGCC
.((.((--((----...(((....)))....---....((.(((---((((.(((-------------((((((.....))).......)))))).....))))))).)))))-).)) ( -31.91)
>DroYak_CAF1 7909 92 - 1
UGGGUG--GU--GUGCUUUGUAAUUGCUAAAAAAAAGGGGGAGG---UGG------------------GGGGAAACGUAGCCAUAUACACCUGACCCAGAGCCACCAGCCAGC-AGCC
(((.((--((--(.(((((((....)).........(((..(((---((.------------------..((........)).....)))))..))))))))))))).)))..-.... ( -34.40)
>consensus
UGGGUG__GUUGGUGCUGCGUAAUUGCUUAA___AAGGGGGUGGUGGUGG__________________GGGUAAACGGAGCCAUAUACACCUGACCUAGAGCCACCAGCCAAC_AGCC
........(((((((((..((....)).........(((...((((.(((..............................)))....))))...)))..)).)))))))......... (-10.07 = -11.95 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:56 2006