| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,327,080 – 15,327,179 |
| Length | 99 |
| Max. P | 0.906520 |
| Location | 15,327,080 – 15,327,179 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 73.53 |
| Mean single sequence MFE | -21.40 |
| Consensus MFE | -15.10 |
| Energy contribution | -15.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.71 |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.906520 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15327080 99 - 22224390 -------------GCUUCACACAUGGUGCUGGCAACCCUGCCAGGCCAUUUCUUUUCCAUCAGCCCUAAUUCCAUCGCACGAUCCCCU----UCAAAGAGCAACCCUGCGCUCAGU -------------.........(((((.((((((....)))))))))))...............................((......----))...((((........))))... ( -20.30) >DroSec_CAF1 31902 88 - 1 -------------GCUUCAUACAUGGUGAUGGCAACCCUGCCAGGGAAUUUAUUUUCCAUCAGCCCU-----------ACGAUCCCCU----UCAAAGAGCAACCCUGCGCUCAGU -------------...........((((((((((....)))).(((((.....))))))))).))..-----------..((......----))...((((........))))... ( -19.60) >DroSim_CAF1 7678 99 - 1 -------------GCUUCAUACAUGGUUAUGGCAACCCUGCCAGGGAAUUUCUUUUCCAUCAGCCCUAAUUCCAUCGUACGAUCCCCU----UCAAAGAGCAACCCUGCGCUCAGU -------------...((.(((((((...(((((....)))))(((((.....))))).............)))).))).))......----.....((((........))))... ( -22.50) >DroEre_CAF1 7673 112 - 1 UGCCUUCAGA----CAUCAUACAUGAUGAUGGCAACCCUGCCAGGGAAUUUCAUUCCCAUCAAUCCCUAUUCCAUCGCACAAACCCCUACAAUCAAAGAGCACCCCUACGCUCAGC (((.......----(((((....))))).(((((....)))))((((((...))))))..................)))..................((((........))))... ( -24.40) >DroYak_CAF1 7387 112 - 1 UGCCUUGAAAACAGCUUCCUACAUGGUGAUGGCAACCCUGUCAGGUGUUUUUUUUUCCAUCAAUCCUUUCCCCAUUAUACAAUCCCCC----UGGAGGAGCACCCCUGUGCCCAGC ......(((((((....((((((.(((.......))).))).))))))))))..............................(((...----.)))((.((((....))))))... ( -20.20) >consensus _____________GCUUCAUACAUGGUGAUGGCAACCCUGCCAGGGAAUUUCUUUUCCAUCAGCCCUAAUUCCAUCGCACGAUCCCCU____UCAAAGAGCAACCCUGCGCUCAGU ........................(((..(((((....)))))(((((.....)))))....)))................................((((........))))... (-15.10 = -15.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:55 2006