Locus 5935

Sequence ID X_DroMel_CAF1
Location 15,322,341 – 15,322,436
Length 95
Max. P 0.839133
window9628

overview

Window 8

Location 15,322,341 – 15,322,436
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 87.89
Mean single sequence MFE -26.38
Consensus MFE -21.36
Energy contribution -21.05
Covariance contribution -0.31
Combinations/Pair 1.17
Mean z-score -1.86
Structure conservation index 0.81
SVM decision value 0.74
SVM RNA-class probability 0.839133
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15322341 95 - 22224390
ACCAAACCAAAUGGCUCCAAAUGCAACCCCGUCACCCUGCAUUUUCAACGGGAAUAUCAGACACUUGGGGUUGCGCUGCAGUAACUUGCCUAAUC
............(((.......(((((((((.....(((...((((....))))...))).....)))))))))((....)).....)))..... ( -24.40)
>DroSec_CAF1 27487 95 - 1
AUUAAACCAAAUGGAUACAAAAGCAACCCUGAAACCAUGCAUUUUCAGCGGGAAUAUCAGGCACUUGGGGUUGCGCUGCAGUAACUUGCCUAAUC
......((....))........(((((((..(..((.((...((((....))))...))))...)..)))))))...((((....))))...... ( -21.50)
>DroSim_CAF1 2988 95 - 1
ACCAAAUCAAAUGGAUACAAAAGCAACCCUGUAACCCUGCAUUUUCAGCGGGAAUAUCAGGCACUUGGGGUUGCGCUGCAGUAACUUGCCUAAUC
.(((.......)))........(((((((((....((((...((((....))))...))))....)))))))))...((((....))))...... ( -24.60)
>DroEre_CAF1 3379 95 - 1
AUGAUAGCGAAUAGCUCCAAAUGCAACCCCGUAACCCUGCAGUUUUAGCGGGAAUAGCAGGCACUUGGGGUUGCGCUGUAGCAACUUGCCUAAUC
......((((...(((.((..((((((((((....(((((.(((((....))))).)))))....)))))))))).)).)))...))))...... ( -35.00)
>consensus
ACCAAACCAAAUGGAUACAAAAGCAACCCCGUAACCCUGCAUUUUCAGCGGGAAUAUCAGGCACUUGGGGUUGCGCUGCAGUAACUUGCCUAAUC
...........(((........(((((((((....((((...((((....))))...))))....)))))))))...((((....)))))))... (-21.36 = -21.05 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:54 2006