Locus 5934

Sequence ID X_DroMel_CAF1
Location 15,321,153 – 15,321,261
Length 108
Max. P 0.543258
window9627

overview

Window 7

Location 15,321,153 – 15,321,261
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.45
Mean single sequence MFE -40.99
Consensus MFE -22.07
Energy contribution -22.30
Covariance contribution 0.22
Combinations/Pair 1.23
Mean z-score -1.75
Structure conservation index 0.54
SVM decision value 0.02
SVM RNA-class probability 0.543258
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15321153 108 - 22224390
CCUGCCGUUUCGGCCAGAACUUCCUGCGCCAGAUUGGUUAGUUGGCCCUUCAGCUGGCUGAGACUGCUGUUCAGCCACGACAUCUUC----GCUGCU----CUCUUC----UGGGCAGCG
...((((.(..((((((......))).)))..).))))..((((((......))((((((((.(....))))))))))))).....(----((((((----(.....----.)))))))) ( -41.30)
>DroPse_CAF1 1803 110 - 1
CCGGCAGUGUCGGCCAGCACUUCCUGGGCCAGAUUCGUCAGCUGGCCCUUGAUGGAGUUGAGGCUGUUGUUCAGCCAAGACAUGUCU----GCUGCCUGUUUGCUCC----UG--UACCU
..(((((...(((.(((((..(((.(((((((.........))))))).....)))(((..(((((.....)))))..))).....)----)))).))).)))))..----..--..... ( -41.60)
>DroEre_CAF1 2149 108 - 1
CCUGCCGUUUCGGCCAGAACUUCCUGAGCCAGAUUGGUUAGUUGGCCCUUCAGCUGGCUGAGACUGCUGUUCAGCCACGACAUCUUC----GCUGCU----CUUUUA----UGGGCAGCG
...((((.(..((((((......))).)))..).))))..((((((......))((((((((.(....))))))))))))).....(----((((((----(.....----.)))))))) ( -41.30)
>DroYak_CAF1 1985 108 - 1
CCUGCCGUUUCGGCCAGAACUUCCUGGGCCAGAUUGGUUAGUUGGCCCUUCAGCUGGCUGAGACUGCUGUUCAGCCACGACAUCUUC----GCUGCU----CUGUUC----UGGGCAGCG
...((.(((((((((((........(((((((.........))))))).....))))))))))).))...................(----((((((----(.....----.)))))))) ( -46.22)
>DroAna_CAF1 19912 116 - 1
CCUGCUGUUUCGGCCAACACCUCCUGGGCCAAAUUAGUCAGCUGGCCCUUCAAUGAGCUGAGGCUGUUGUUCAGCCACGACAUCUUCACCAGCUGCU----CUCUCCCCUCUCGGUGGCG
...((((...))))...((((....(((.......((.(((((((....(((......)))(((((.....)))))............)))))))))----.....)))....))))... ( -33.90)
>DroPer_CAF1 1793 110 - 1
CCGGCAGUGUCGGCCAGCACUUCCUGGGCCAGAUUCGUCAGCUGGCCCUUGAUGGAGUUGAGGCUGUUGUUCAGCCAAGACAUGUCU----GCUGCCUGUUUGCUCC----UG--UACCU
..(((((...(((.(((((..(((.(((((((.........))))))).....)))(((..(((((.....)))))..))).....)----)))).))).)))))..----..--..... ( -41.60)
>consensus
CCUGCCGUUUCGGCCAGAACUUCCUGGGCCAGAUUGGUCAGCUGGCCCUUCAGCGAGCUGAGACUGCUGUUCAGCCACGACAUCUUC____GCUGCU____CUCUCC____UGGGCAGCG
...((.((((((((...........(((((((.........)))))))........)))))))).))((((.......)))).........(((((..................))))). (-22.07 = -22.30 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:53 2006