| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,320,769 – 15,320,876 |
| Length | 107 |
| Max. P | 0.592215 |
| Location | 15,320,769 – 15,320,876 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 89.22 |
| Mean single sequence MFE | -25.69 |
| Consensus MFE | -20.00 |
| Energy contribution | -19.34 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15320769 107 + 22224390 CCAUGCACCUUGGCGGUCGGUCUGCCUAUCGCCAAUCGAUAGCUGACCAAA------AACAAUAACAAUAACAAAAUCAGCUGACGAUAGGACGUCGGAUAUCGAUACCAUAU ..........(((((((.((....)).)))))))((((((((((((.....------...................)))))(((((......)))))..)))))))....... ( -29.16) >DroEre_CAF1 1766 108 + 1 UCAUGCACCUUAUCGACCAGUCUGCCCAUCGCCAAUCGAUAGCUGGCCCAAA-----AACAAUAACAAUAACAAAAUCAGCUGACGAUAGGACGUCGGAUAUCGAUACCAUAU ..........((((((...(((((.....((((.((((.(((((((......-----...................))))))).)))).)).)).))))).))))))...... ( -23.51) >DroYak_CAF1 1593 113 + 1 CCAUGUAUCUUGGCGGCCAGUCUGCCUAUCGCUAAUCGAUAGCUGACCAAAAACAAUAACAAUAACAAUAACAAAAUCAGCUGACGAUAGGACGUCGGAUAUCGAUACCAUAU ....(((((..(((((.....)))))...((((.((((.(((((((..............................))))))).)))).)).)).........)))))..... ( -24.41) >consensus CCAUGCACCUUGGCGGCCAGUCUGCCUAUCGCCAAUCGAUAGCUGACCAAAA_____AACAAUAACAAUAACAAAAUCAGCUGACGAUAGGACGUCGGAUAUCGAUACCAUAU .............(((...(((((.....((((.((((.(((((((..............................))))))).)))).)).)).))))).)))......... (-20.00 = -19.34 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:52 2006