Locus 5932

Sequence ID X_DroMel_CAF1
Location 15,319,914 – 15,320,027
Length 113
Max. P 0.530132
window9625

overview

Window 5

Location 15,319,914 – 15,320,027
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.07
Mean single sequence MFE -37.55
Consensus MFE -24.06
Energy contribution -24.90
Covariance contribution 0.84
Combinations/Pair 1.27
Mean z-score -1.65
Structure conservation index 0.64
SVM decision value -0.01
SVM RNA-class probability 0.530132
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15319914 113 + 22224390
U----CGCAGAA---CCCAUCCAGCUGCCCAGUUACUACAAUCCGAGCAUCAUCAAUGCCAAUCGCUAUGCGGAGCAGCAGCAGAAGCGCAAGCUACUGUGGGGCUCCAAGAAGAGCGAG
(----(......---(((.....(((((((..............(.((((.....)))))....((...)))).))))).((((.(((....))).)))))))((((......)))))). ( -37.50)
>DroPse_CAF1 847 117 + 1
UCGCCCGUGAAG---CCCAUCCAGCUGCCGAGCUACUACAAUCCGGGCAUCAUCAAUGCCAAUCGGUACGCGGAGCAGCAGCAGAAGCGCAAGUUGCUGUGGGGCUCAAAGAAGAGUGAU
((((.(.(((.(---(((.(((.((((((((..............(((((.....)))))..)))))).)))))((((((((..........)))))))).))))))).....).)))). ( -42.49)
>DroEre_CAF1 884 113 + 1
U----CGCAGAA---CCCAUCCAGCUGCCCAGUUACUAUAAUCCGGGCAUCAUCAAUGCUAAUCGCUAUGCGGAGCAGCAGCAGAAGCGCAAGCUACUGUGGGGCUCUAAGAAAAGCGAG
(----((((((.---(((.....(((((((...............(((((.....)))))....((...)))).))))).((((.(((....))).)))).))).))).......)))). ( -38.41)
>DroWil_CAF1 4300 113 + 1
C----AGCAGCC---CCCAUCCAAUUACCCAGCUAUUACAAUCCGGGCAUUAUUAAUGCCAAUCGGUAUGCCGAACAGCAACAGAAACGCAAGUUAAUCUGGGGCGCCAAGAAGAGUGAG
.----.((.(((---(...............(((...........(((((.....)))))..((((....))))..)))..(((((((....)))..))))))))))............. ( -31.40)
>DroAna_CAF1 18449 116 + 1
C----CUUGGAAUCCCCGAUCCAGUUGCCCAGCUACUAUAAUCCCGGAAUCAUAAACGCCAAUCGCUAUGCCGAGCAGCAGCAGAAGCGCAAGCUGCUAUGGGGCUCCAAGAAGAACGAG
.----((((((..(((((.....(((((...(((..........(((...((((...((.....)))))))))))).)))))((.(((....))).)).))))).))))))......... ( -33.00)
>DroPer_CAF1 838 117 + 1
UCGCCCGUGAAG---CCCAUCCAGCUGCCGAGCUACUACAAUCCGGGCAUCAUCAAUGCCAAUCGGUACGCGGAGCAGCAGCAGAAGCGCAAGUUGCUGUGGGGCUCAAAGAAGAGUGAU
((((.(.(((.(---(((.(((.((((((((..............(((((.....)))))..)))))).)))))((((((((..........)))))))).))))))).....).)))). ( -42.49)
>consensus
U____CGCAGAA___CCCAUCCAGCUGCCCAGCUACUACAAUCCGGGCAUCAUCAAUGCCAAUCGCUAUGCGGAGCAGCAGCAGAAGCGCAAGCUACUGUGGGGCUCCAAGAAGAGCGAG
...............(((.....(((((...((............(((((.....))))).........))...))))).((((.(((....))).)))))))((((......))))... (-24.06 = -24.90 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:52 2006