Locus 5931

Sequence ID X_DroMel_CAF1
Location 15,319,660 – 15,319,780
Length 120
Max. P 0.969469
window9624

overview

Window 4

Location 15,319,660 – 15,319,780
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 73.89
Mean single sequence MFE -51.17
Consensus MFE -29.86
Energy contribution -35.05
Covariance contribution 5.19
Combinations/Pair 1.05
Mean z-score -2.15
Structure conservation index 0.58
SVM decision value 1.64
SVM RNA-class probability 0.969469
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15319660 120 + 22224390
CGGUGGAGCUGUGGCCGGAUCUCAUAUGCUGCUCGCUAAAUCAGGCGGCGGAGCAGGAUCAACGGCAACUAAUGCAACAGCAGCGGCGAGGGUUGCAGCGGCCGCUCUGGUAGCUGCCAA
.((..(.(((((((((((((((....((((.((((((......))))).).)))))))))....((((((..(((..(....)..)))..))))))..)))))))...)))..)..)).. ( -50.00)
>DroSec_CAF1 396 120 + 1
CGUUGGAGCUGUGGCCGGAUCUCAUGUUCUGCUCGCUAAGUCAGGCGGCGGAGCAGGAUCAACGGCAACUAAUGCAACAGCAGCGGCGAGGGUUGCAGCGGCCGCUCUGGUAGCUGCCAA
.((((.(...((.(((((((((..((((((((.((((......)))))))))))))))))..)))).))...).)))).(((((.((.(((((.((....)).))))).)).)))))... ( -56.60)
>DroSim_CAF1 205 120 + 1
CGGUGGAGCUGUGGCCGGAUCUCAUGUUCUGCUCGCUAAGUCAGGCGGCGGAGCAGGAUCAACGGCAACUAAUGCAACAGCAGCGGCGAGGGUUGCAGCGGCCGCUCUGGUAGCUGCCAA
.((..(.(((((((((((((((..((((((((.((((......)))))))))))))))))....((((((..(((..(....)..)))..))))))..)))))))...)))..)..)).. ( -56.40)
>DroAna_CAF1 18162 90 + 1
UGGC--AGCGGUGG----UGCUCACCUGCAG--------------AGCAGUGGCGGUGUCACUGGCA-GUAGUUCGUCGUCAGUGGC------UGCAGUG---GCUCUGGCAGCCGCCAA
((((--.((((((.----....))))(((((--------------(((....(((((..(((((((.-..........)))))))))------)))....---))))).))))).)))). ( -41.70)
>consensus
CGGUGGAGCUGUGGCCGGAUCUCAUGUGCUGCUCGCUAAGUCAGGCGGCGGAGCAGGAUCAACGGCAACUAAUGCAACAGCAGCGGCGAGGGUUGCAGCGGCCGCUCUGGUAGCUGCCAA
..........((((((((((((..((((((((.((((......)))))))))))))))))....((((((..(((..(....)..)))..))))))..)))))))..((((....)))). (-29.86 = -35.05 +   5.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:51 2006