| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,318,893 – 15,318,996 |
| Length | 103 |
| Max. P | 0.566425 |
| Location | 15,318,893 – 15,318,996 |
|---|---|
| Length | 103 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 81.76 |
| Mean single sequence MFE | -38.73 |
| Consensus MFE | -26.50 |
| Energy contribution | -29.62 |
| Covariance contribution | 3.12 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15318893 103 - 22224390 UGCGCCGGCGACUAAGGAUCUAGGUCUAGUUGCUAGAUGCUUAGGAUGCUGGAGGGGAAAUAGAAAGAGGAUUCGGGCUGUGGGCCACCAGCUGGG-------GUCCUUU ..(.((((((.(((((.((((((.........)))))).)))))..)))))).)...........(((((((((.(((((.(.....)))))).))-------))))))) ( -42.70) >DroSim_CAF1 17650 103 - 1 AGCGUCGGUGACUAAGGAUCUAGAUCU-------UGAUGCUUAGGAUGCUGGAGGGGGAAUAGAAAGAGGAUUCGGGCUGUGGGCCACCAGCUGGGGCCCGAGGUCCUUU (((((((....)((((.(((.......-------.))).)))).)))))).......((((.........))))(((((.((((((.((....)))))))).)))))... ( -38.10) >DroEre_CAF1 13312 106 - 1 UGCGCUGGCGACUAAGGAUCUAGGUCUAGAUGCUAGAUGC-UAGGAUGCUGGGG--GGGACUGAAAGAGGAUGUGGGCUGUGGGCCACCAGCUGGGGCCCGAGGUCC-UU ....(..(((.((.((.((((((.........)))))).)-).)).)))..)((--....))............(((((.((((((.((....)))))))).)))))-.. ( -42.00) >DroYak_CAF1 11790 107 - 1 UGCGCUGCCGACUAAGGAUCUAGGUCUAGAUGCUAGAUGC-UAGGAUGCUGGGGGGGGGAAUGAAAGAGGUUGUGGGCUGUGGACCACCAGCUGA-GCCCGAGGUCC-UU ....((.((..(((.(.((((((((((((...)))))).)-)).))).))))..)).)).......((((...((((((.(((....)))....)-)))))....))-)) ( -32.10) >consensus UGCGCCGGCGACUAAGGAUCUAGGUCUAGAUGCUAGAUGC_UAGGAUGCUGGAGGGGGAAUAGAAAGAGGAUGCGGGCUGUGGGCCACCAGCUGGGGCCCGAGGUCC_UU ..(.((((((.(((((.((((((.........)))))).)))))..)))))).)....................(((((.((((((.((....)))))))).)))))... (-26.50 = -29.62 + 3.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:50 2006