| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,304,218 – 15,304,313 |
| Length | 95 |
| Max. P | 0.838322 |
| Location | 15,304,218 – 15,304,313 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 65.64 |
| Mean single sequence MFE | -31.70 |
| Consensus MFE | -8.95 |
| Energy contribution | -12.53 |
| Covariance contribution | 3.59 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15304218 95 - 22224390 GAAAAAUACA-CUGAUCCGUUUUACGAUUGAGUUCAGGGAACAUUUUAGCCAGCUGCGCUUACUGCGAGAGCUGGCC-GAAGAUGUCAUCCUGGAUA ..........-..((((........))))..((((((((.(((((((.(((((((.(((.....)))..))))))).-.)))))))..)))))))). ( -33.40) >DroSim_CAF1 8015 96 - 1 AAAAAAUACGGUUCAUCCGCUUUACGAUUGAGUUCAGGAAACACUUUAGCCAGCUGCGCUUUCUGCGAGAGCUGGCC-GAAGAUGCCAUCCUGGAUA ........(((.....)))............((((((((..(((((..(((((((.(((.....)))..))))))).-.))).))...)))))))). ( -35.50) >DroEre_CAF1 7960 95 - 1 GACAAAUACG-CUGAUCAACUUUACGGUUGAGUUCAGGGAACACUUUUCCCAGCUGCGCUUGCUGCGACUGCUGGUC-GAGGAGGCCAUCCUGGAUA ..........-....((((((....))))))((((((((....(((((((((((..(((.....)))...)))))..-))))))....)))))))). ( -33.30) >DroWil_CAF1 8632 95 - 1 AACAACAUCG-CUUAUUUCGUUUAUUUGGCACAUGAAAAAGGACUUUGAAAUGCUACAACUGCUGCAUCAUUUGGGUACAACAUG-CAUAGUGGACA ..........-........((((...(((((..(.(((......))).)..)))))..((((.(((((...(((....))).)))-)))))))))). ( -13.20) >DroYak_CAF1 8334 95 - 1 GACAAAUACG-CUGAUCAAUCUAACGAUUGAAUUCAGGGAACACUUUCGCCAGCUGCGUUUGCUGCGACUGCUGGCC-GAAGAUGUUAUCCUGGAUA ..........-....((((((....))))))((((((((((((((((.((((((..(((.....)))...)))))).-)))).)))).)))))))). ( -38.90) >DroAna_CAF1 9359 95 - 1 AAAAGCCACU-CUGCUCGACUUUAUCGGGCGGUUCCGGGAGCAGUUCCGAGAGCUUCACAUCCUACGCCGCCUGGUG-GACGAUGUGGUGCUGGACA ....(((((.-(..((((..(((((((((((((...((((..(((((...))))).....))))..)))))))))))-))))).)..).).))).). ( -35.90) >consensus AAAAAAUACG_CUGAUCAACUUUACGAUUGAGUUCAGGGAACACUUUAGCCAGCUGCGCUUGCUGCGACAGCUGGCC_GAAGAUGUCAUCCUGGAUA ...............................((((((((..((.((((((((((..(((.....)))...))))))..)))).))...)))))))). ( -8.95 = -12.53 + 3.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:48 2006