Locus 5927

Sequence ID X_DroMel_CAF1
Location 15,299,060 – 15,299,156
Length 96
Max. P 0.817571
window9620

overview

Window 0

Location 15,299,060 – 15,299,156
Length 96
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 75.46
Mean single sequence MFE -12.03
Consensus MFE -7.25
Energy contribution -7.37
Covariance contribution 0.11
Combinations/Pair 1.09
Mean z-score -1.80
Structure conservation index 0.60
SVM decision value 0.67
SVM RNA-class probability 0.817571
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15299060 96 - 22224390
ACUUUCAAUUGCUAAAUUAAAGUAUUUGAAAGUGUUUUA-GAUUCAAAAACUCGAAUCAAACAAUAAUUUACUCAAUACGCUAACGUUUUUCUAACC
((((((((.((((.......)))).))))))))((((..-(((((........))))))))).................((....)).......... ( -16.00)
>DroSec_CAF1 2490 75 - 1
ACUUUCAAUCGCUAAAUGAAAGUAUUUGAAAGUGUUUUU-AGUUCAAAAAC---------------------UCAAUAUACAAACGUUUUUCUAACC
((((((((..(((.......)))..))))))))((((((-.....))))))---------------------......................... ( -10.90)
>DroSim_CAF1 3016 76 - 1
ACUUUCAAUCGCUAAAUGAAAGUAUUUGAAGUUUUUUUUAAGUUCAAAAAC---------------------UCAAUAUACAAACGUUUUUCUAACC
(((((((.........))))))).((((((.((......)).))))))...---------------------......................... (  -9.20)
>consensus
ACUUUCAAUCGCUAAAUGAAAGUAUUUGAAAGUGUUUUU_AGUUCAAAAAC_____________________UCAAUAUACAAACGUUUUUCUAACC
((((((((..(((.......)))..))))))))................................................................ ( -7.25 =  -7.37 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:47 2006