Locus 5926

Sequence ID X_DroMel_CAF1
Location 15,288,874 – 15,288,974
Length 100
Max. P 0.793327
window9619

overview

Window 9

Location 15,288,874 – 15,288,974
Length 100
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 75.52
Mean single sequence MFE -27.42
Consensus MFE -20.56
Energy contribution -21.20
Covariance contribution 0.64
Combinations/Pair 1.10
Mean z-score -1.04
Structure conservation index 0.75
SVM decision value 0.59
SVM RNA-class probability 0.793327
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15288874 100 + 22224390
-UUAUUUUUCUUAAUAUGU-------UA-AUAUAAUCCUUUCCAGAUCGUCGUCGCUGGCAUGGCUCUGCCUGGUCUGGGCUACAUCUUCGCCUUCCUGGCAGCCAAGC
-..................-------..-............((((..((....))))))..(((((..(((.((...((((.........)))).)).))))))))... ( -23.10)
>DroSec_CAF1 4174 91 + 1
-UAAAC---------CCAU-------UU-AAACACUCCUUUCCAGAUCGUCGUCGCUGGCAUGGCUCUGCCAGGUCUGGGCUACAUCUUCGCCUUCCUGGCGGCCAAGC
-.....---------....-------..-............((((..((....))))))..(((((..((((((...((((.........)))).)))))))))))... ( -27.70)
>DroSim_CAF1 4601 91 + 1
-UAAAC---------CCAU-------UU-AAACACUCCUUUCCAGAUCGUCGUCGCUGGCAUGGCUCUGCCAGGUCUGGGCUACAUCUUCGCCUUCCUGGCGGCCAAGC
-.....---------....-------..-............((((..((....))))))..(((((..((((((...((((.........)))).)))))))))))... ( -27.70)
>DroEre_CAF1 4921 99 + 1
AUUAAG---------CUAUUGGAAACUU-UAACGCUCCUUUCCAGAUCAUUGUCGCUGGCAUAGCUCUACCGGGUCUGGGCUACAUCUUCGCCUACCUGGCAGCCAAGC
....((---------((((((((((...-.........))))))).....(((.....))))))))((.((((((..((((.........)))))))))).))...... ( -23.70)
>DroYak_CAF1 4382 100 + 1
GUCAAC---------CUAUUUGAUGUUUCUAACGCUCCUUUGCAGAUCGUCGUCGCUGGCAUGGCGCUGCCGGGUCUGGGCUACAUCUUCGCCUUCCUGGCAGCCAAGC
((((.(---------(....(((((..(((...((......))))).))))).....))..))))(((((((((...((((.........)))).)))))))))..... ( -35.40)
>DroAna_CAF1 3688 79 + 1
------------------------------UGUGUUCCUCCUCAGAUCGUCGUGGCUGGCAUGGCGCUGCCCGGGCUCGGCUACAUCUUUGCCUGGCUGGCGGCCAAGC
------------------------------..................((((((.....))))))((((((..((((.(((.........))).))))))))))..... ( -26.90)
>consensus
_UAAAC_________CUAU_______UU_AAACACUCCUUUCCAGAUCGUCGUCGCUGGCAUGGCUCUGCCAGGUCUGGGCUACAUCUUCGCCUUCCUGGCAGCCAAGC
..........................................(((..........)))((.((((..(((((((...((((.........)))).))))))))))).)) (-20.56 = -21.20 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:46 2006