Locus 5925

Sequence ID X_DroMel_CAF1
Location 15,285,309 – 15,285,405
Length 96
Max. P 0.702300
window9618

overview

Window 8

Location 15,285,309 – 15,285,405
Length 96
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 76.27
Mean single sequence MFE -29.42
Consensus MFE -18.36
Energy contribution -19.00
Covariance contribution 0.64
Combinations/Pair 1.17
Mean z-score -1.43
Structure conservation index 0.62
SVM decision value 0.35
SVM RNA-class probability 0.702300
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15285309 96 + 22224390
ACAUUUUCAUUCUU---------UUA-UCCAGGUCCAAUGGUCCAGCUGCAACAUCUUCAGCACCCAGGAUAAUGCUGCCGCGGCCAUCGCUGCCACCGGCGUGCC
..............---------.((-(((.((.((...)).)).((((.........)))).....)))))((((((..(((((....)))))...))))))... ( -26.50)
>DroVir_CAF1 688 106 + 1
AAAUAUUCGUUCCUGAUUUUGCGCCCACACAGGUCCAGUGGUCUAGCUGCAACAUAUUCAGCACACAGGAUCAUGCUGCGGCUGCCAUUGCAGCCACUGGAGUGCC
....................((((((.....))(((((((((..(((((((.(((((((........)))).))).)))))))((....)).))))))))))))). ( -35.00)
>DroWil_CAF1 995 93 + 1
UUAU-UUUAUU-UU---------C-A-CUUAGGUCCAAUGGUCGAGCUGUAAUAUUUUCAGUACCCAGGAUAAUGCCGCAGCUGCUAUUGCUGCCACCGGAGUGCC
....-......-..---------(-(-(((.(((.(((((((..((((((..((((.((.........)).))))..)))))))))))))..)))....))))).. ( -22.60)
>DroYak_CAF1 1156 94 + 1
ACAUUUCCAUG-UU---------U-C-GCCAGGUCCAAUGGUCCAGCUGCAACAUCUUCAGCACACAGGAUAACGCUGCGGCGGCCAUCGCAGCCACCGGAGUGCC
.....(((.((-(.---------.-.-....((.((...)).)).((((.........))))..))))))...((((.(((.(((.......))).))).)))).. ( -26.80)
>DroMoj_CAF1 2797 96 + 1
AAAUAUUCCUUCUC---------UCCAC-UAGGUGCAAUGGUCGAGCUGCAAUAUUUUCAGCACACAGGAUCAUGCAGCGGCGGCAAUCGCUGCCACUGGAGUCCC
.............(---------((((.-..(.((((.((((((.((((.((....)))))).)....))))))))).)((((((....))))))..))))).... ( -31.40)
>DroAna_CAF1 710 93 + 1
-CAUUU--GUUCUG---------UCC-UUCAGGUGCAAUGGUCCAGCUGCAACAUUUUCAGCACACAGGACCACGCGGCGGCGGCCAUCGCUGCCACCGGAGUGCC
-.....--.....(---------..(-(((.(((((..((((((.((((.........)))).....)))))).))(((((((.....))))))))))))))..). ( -34.20)
>consensus
ACAUUUUCAUUCUU_________UCC_CCCAGGUCCAAUGGUCCAGCUGCAACAUUUUCAGCACACAGGAUAAUGCUGCGGCGGCCAUCGCUGCCACCGGAGUGCC
...............................((..(..((((...((.(((..(((((........)))))..))).))((((((....))))))))))..)..)) (-18.36 = -19.00 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:45 2006