Locus 5924

Sequence ID X_DroMel_CAF1
Location 15,283,603 – 15,283,705
Length 102
Max. P 0.709764
window9617

overview

Window 7

Location 15,283,603 – 15,283,705
Length 102
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 71.62
Mean single sequence MFE -29.03
Consensus MFE -17.33
Energy contribution -16.55
Covariance contribution -0.78
Combinations/Pair 1.35
Mean z-score -1.36
Structure conservation index 0.60
SVM decision value 0.37
SVM RNA-class probability 0.709764
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15283603 102 - 22224390
CAUGUCCGGCUCCGGUCUCGACGAGAAUCCCUUCGGGGAGCCCAAUCUGGACAAUCCGUUUGCGGUGAGGC----GAUAGAAGAGCUAGGAGAGAGAGCGCGGAAG
....((((((((...((((..(.((..((((....))))(((..((((..((.....))..).)))..)))----..........)).)..)))))))).)))).. ( -36.00)
>DroVir_CAF1 124437 98 - 1
AAUGUCCGGCAACGGUUUCGAUGAAAAUCCAUUUGGUGAGCCCAAUCUGGAUAAUCCAUUUGCGGUAAGCCCGACAACAAAAAUUCU--------GCUGAUGAAAA
..((((.(((.((.((...((((...(((((.((((.....))))..)))))....)))).)).))..))).))))...........--------........... ( -21.60)
>DroPse_CAF1 110738 77 - 1
CAUGUCCGGCUCCGGUCUUGAUGAAAAUCCCUUUGGCGAGCCCAAUCUGGACAAUCCGUUUGCGGUAAGUC-----------------------------CGGAAU
.......((((((.(....(((....)))....).).)))))...(((((((...(((....)))...)))-----------------------------)))).. ( -26.70)
>DroEre_CAF1 95811 102 - 1
CAUGUCCGGCUCCGGUCUCGACGAGAAUCCCUUCGGGGAGCCUAAUCUGGACAAUCCGUUUGCGGUAAGGC----GAUAAAAGAGCGAGGAGAGAGAGCGCGGAAG
....(((((((((..(((((.(.....((((....))))((((.((((..((.....))..).))).))))----.........))))))...).)))).)))).. ( -38.70)
>DroMoj_CAF1 142656 97 - 1
-AUGUCCGGCAACGGUUUUGAUGAAAAUCCAUUUGGCGAGCCCAAUCUGGAUAACCCAUUUGCGGUAAGCCUGACAACAAAAAUGCU--------GUGCACGAAAA
-.((..(((((..((.(((.....))).))....(((..((((((..(((.....))).))).)))..)))............))))--------)..))...... ( -24.50)
>DroPer_CAF1 110979 77 - 1
CAUGUCCGGCUCCGGUCUUGAUGAAAAUCCCUUUGGCGAGCCCAAUCUGGACAAUCCGUUUGCGGUAAGUC-----------------------------CGGAAU
.......((((((.(....(((....)))....).).)))))...(((((((...(((....)))...)))-----------------------------)))).. ( -26.70)
>consensus
CAUGUCCGGCUCCGGUCUCGAUGAAAAUCCCUUUGGCGAGCCCAAUCUGGACAAUCCGUUUGCGGUAAGCC_____A_AAAA__GCU________G_GC_CGGAAA
..(((((((....((.((((.((((......)))).))))))....)))))))..(((....)))......................................... (-17.33 = -16.55 +  -0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:44 2006