Locus 5923

Sequence ID X_DroMel_CAF1
Location 15,281,998 – 15,282,089
Length 91
Max. P 0.580124
window9616

overview

Window 6

Location 15,281,998 – 15,282,089
Length 91
Sequences 3
Columns 93
Reading direction forward
Mean pairwise identity 71.48
Mean single sequence MFE -13.43
Consensus MFE -7.87
Energy contribution -9.20
Covariance contribution 1.33
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.59
SVM decision value 0.09
SVM RNA-class probability 0.580124
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15281998 91 + 22224390
AGCAUAAUGCUAUAAUCUGUAGGGGAA-AGCAU-UAUUAUAUACUAUAUACUAUGCAUGCAGUAAAUAAUGCUAGAAAUGCAUUUAAAAACUA
.((((..(.((((.....)))).)...-(((((-((((...((((.(((.......))).)))))))))))))....))))............ ( -15.30)
>DroSec_CAF1 105841 79 + 1
AGCAUAA--------------GGGGAAGGGCAUAUACUAUAUACUAUAUAGUAUGCAUGCAAUAAAUAAUGCUAGAAAUGCAUUUAAAAACUA
.((((..--------------........(((..((((((((...)))))))))))..(((........))).....))))............ ( -13.40)
>DroYak_CAF1 93801 74 + 1
AGCAUAGUGGUAUAAUCUGUAGG-GAA-AGCAU--------------A---UAUGCAUGCAAUAAAUAAUGCUAGAAAUGCAUUUCAAAACGA
.((((..((((((..(((....)-)).-.((((--------------.---.....))))........))))))...))))............ ( -11.60)
>consensus
AGCAUAAUG_UAUAAUCUGUAGGGGAA_AGCAU_UA_UAUAUACUAUAUA_UAUGCAUGCAAUAAAUAAUGCUAGAAAUGCAUUUAAAAACUA
.((((........................((((..((((((.....))))))))))..(((........))).....))))............ ( -7.87 =  -9.20 +   1.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:43 2006