Locus 5919

Sequence ID X_DroMel_CAF1
Location 15,273,683 – 15,273,782
Length 99
Max. P 0.817856
window9608

overview

Window 8

Location 15,273,683 – 15,273,782
Length 99
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 70.61
Mean single sequence MFE -17.97
Consensus MFE -11.69
Energy contribution -10.97
Covariance contribution -0.72
Combinations/Pair 1.18
Mean z-score -1.25
Structure conservation index 0.65
SVM decision value 0.67
SVM RNA-class probability 0.817856
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15273683 99 + 22224390
AAGGGAAAACUUUAUUAAUAAUGGAGCUAAUAGAGUUUUGAGGACCAG--GCCAGCCCAGUCCACACCC----------CC-C-----CAAAAUUGC-ACCCCCACCACC-CCAAAAAA
..(((((((((((((((..........))))))))))))..((((..(--(....))..))))......----------.)-)-----)........-............-........ ( -22.20)
>DroPse_CAF1 100322 105 + 1
AAAGGGAAACUUUAUUAAUAAUGGAGCUAAUAGAGUUUUGAGGACCCU--GUCGCU-----CCUCCACCCCA-------CCCCUACGGCGGAAUCACUACCCCUGCAACCACCAAAUCC
..((((................(((((..((((.(((.....))).))--)).)))-----))(((.((...-------.......)).)))........))))............... ( -22.00)
>DroEre_CAF1 86473 88 + 1
AAGGGAAAACUUUAUUAAUAAUGGAGCUAAUAGAGUUUUGAGGACCAG--GCCGAA-----CCACACCC-------------C-----CAAAAUUGC-ACCCCCC-AACC-CCCGA---
..(((((((((((((((..........))))))))))))(.((....(--(.....-----))....))-------------.-----)........-....)))-....-.....--- ( -14.60)
>DroYak_CAF1 85980 87 + 1
AAGGGAAAACUUUAUUAAUAAUGGAGCUAAUAGAGUUUUGAGGACCAA--GCCGAA-----CCACACCC----------C--C-----CAAAAUUGC-ACCCCC---ACC-CCAAA---
..(((((((((((((((..........))))))))))))..((.....--.))...-----........----------)--)-----)........-......---...-.....--- ( -14.50)
>DroAna_CAF1 84548 84 + 1
AAGGGAAAACUUUAUUAAUAAUGAAGCUAAUAGAGUUUUGAGGACCCAUUGCCCAG-----CCUCCGUC-------------U-----CAAAAAU-------CC---GCC-UCAAAAA-
..(((((((((((((((..........))))))))))))((((.............-----))))....-------------.-----......)-------))---...-.......- ( -13.92)
>DroPer_CAF1 99986 112 + 1
AAAGGGAAACUUUAUUAAUAAUGGAGCUAAUAGAGUUUUGAGGACCCU--GUCGCC-----CCUCCACCCCACACAAAACCCCUACGGCGGAAUCACUACCCCUGCAGCCACCAAAACC
..(((((((((((((((..........))))))))))).((((.....--......-----))))...............))))..((.((...((.......))...)).))...... ( -20.60)
>consensus
AAGGGAAAACUUUAUUAAUAAUGGAGCUAAUAGAGUUUUGAGGACCAA__GCCGAA_____CCACACCC__________C__C_____CAAAAUUGC_ACCCCC__AACC_CCAAAA__
..(((((((((((((((..........))))))))))))..((........))................................................)))............... (-11.69 = -10.97 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:37 2006