Locus 5918

Sequence ID	X_DroMel_CAF1
Location	15,268,332 – 15,268,441
Length	109
Max. P	0.622786

overview

Window 7

Location	15,268,332 – 15,268,441
Length	109
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	76.57
Mean single sequence MFE	-17.92
Consensus MFE	-8.25
Energy contribution	-9.81
Covariance contribution	1.56
Combinations/Pair	1.07
Mean z-score	-2.36
Structure conservation index	0.46
SVM decision value	0.18
SVM RNA-class probability	0.622786
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15268332 109 - 22224390
UUUCCAUUUUGAUUGGGUUCGCCACACAUACUCAUCCACU-CGUCCCUUUGUAU----CUCACUU-CUUUUUGAUAUCUUUUUGUUUCAUCUCGGACGGCGAAUCAUCAAUCAAA
.......((((((((((((((((.................-.........((((----(......-......)))))......((((......))))))))))))..)))))))) ( -21.70)
>DroSec_CAF1 92993 111 - 1
UUUCCAUUUUGAUUGGGUUCGCCACACACACUCAUCCACUCCGUCCCUUUGUAUCUAUCUCACAU-CUUUUUGAUAUCUUUUUGUUUCAUCUCGGACGGCGAAU---CAAUCAAA
.......(((((((((.((((((...........................(((((..........-......)))))......((((......)))))))))))---)))))))) ( -20.39)
>DroEre_CAF1 81984 83 - 1
UUUCCAUUUUGAUUGGGUUCGCCACACAUAGUCG---------CCCCAUUGUAU----CUC--UU-CUUUUUAUUAGUUU-UUGUUUCAUCU---------------CAGUCAAA
.......((((((((((...((.((.....)).)---------)..........----...--..-((.......))...-.........))---------------)))))))) (  -9.00)
>DroYak_CAF1 81257 97 - 1
UUUCCAUUUUGAUUGGGUUCGCCACACAUACUCA---------UCCCCUUGGAU----CUC--UGCCUUUUUAUUAGUUUUUUGUUUCAUCUCCGACGGCGAAU---CAAUCAAA
.......(((((((((.((((((..........(---------(((....))))----...--....................(((........))))))))))---)))))))) ( -20.60)
>consensus
UUUCCAUUUUGAUUGGGUUCGCCACACAUACUCA_________UCCCUUUGUAU____CUC__UU_CUUUUUAAUAGCUUUUUGUUUCAUCUCGGACGGCGAAU___CAAUCAAA
.......((((((((.(((((((..........................................................................)))))))...)))))))) ( -8.25 =  -9.81 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:36 2006