Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,253,703 – 15,253,821 |
Length | 118 |
Max. P | 0.804502 |
Location | 15,253,703 – 15,253,821 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.96 |
Mean single sequence MFE | -36.42 |
Consensus MFE | -26.12 |
Energy contribution | -26.50 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.19 |
Mean z-score | -2.09 |
Structure conservation index | 0.72 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.804502 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15253703 118 + 22224390 AACUGAAACACGAGCUGCCUAAGAGUGACAGAGAUUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAUCGGACUGC--UCUGUACGGAAAUGUAAGAGUGCAGCGUUGGCAGGAUGUGG ........((((..(((((.....(((.(((((...((((...(((....)))......((.......))))))..)--))))))).....((((....)))).....)))))..)))). ( -35.00) >DroSec_CAF1 77084 110 + 1 AACUGAAACACGAGCUG--------UGACAGAGAUUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAUCGGACUGC--UCUGUACGGAAAUGUACGAGUGCAGCGUUGGCAGGAUGUGG ..(((...((...((((--------(.((((((...((((...(((....)))......((.......))))))..)--))))).((........))...)))))..)).)))....... ( -32.30) >DroEre_CAF1 69940 118 + 1 AACUGAAACACGAGCUGCCAAAGGGUGACACAGAUUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAGCGGACUGC--GCUGCACGGAAGUGUGCGAGUGUAGCGUUGGCAGGAUGUGG ........((((..(((((((...((.((((.....((((...(((....))).....(....)......))))..(--((.((((....))))))).)))).)).)))))))..)))). ( -42.20) >DroYak_CAF1 69039 120 + 1 AACUGAAACACGAGCAGCCAAAGAGUGACAGAGAAUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAUCAGACUGCGCGCUGCACGGAAAUGUGCGAGUGUAGUAGGUGCAGGAUGUGG ........(((((....((..((((.((((.....)))).))))((....))......))..)).........(((((((((((((............)))))))..))))))...))). ( -36.20) >consensus AACUGAAACACGAGCUGCCAAAGAGUGACAGAGAUUGUCCUUCUGGGAAACCAAAAUCGGAAUCAAAAUCGGACUGC__GCUGCACGGAAAUGUACGAGUGCAGCGUUGGCAGGAUGUGG ..((((................(((.((((.....)))).)))(((....)))...)))).........((..((((..(((((((............)))))))....))))..))... (-26.12 = -26.50 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:35 2006