| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,243,531 – 15,243,626 |
| Length | 95 |
| Max. P | 0.788884 |
| Location | 15,243,531 – 15,243,626 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 77.11 |
| Mean single sequence MFE | -22.95 |
| Consensus MFE | -11.10 |
| Energy contribution | -11.62 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.788884 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15243531 95 + 22224390 CAAAAGCAAGAAAAAUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCCUGGACAGUGCGUUUCAAAACUGUAAGGCAAGCGUA--CGC----------U- .....(((((.(((..((((.((....)).))))..))).)))))...((..(((((..(((((..........))))).)))))..))..--...----------.- ( -22.00) >DroPse_CAF1 69239 94 + 1 CAAAAACAU-AAAAAGUUGAGGCCGCAGUCUCAACAUAU-------------UACACAUACAGUGCGUUUGAGCGCUGUAAGGCAACACUGGGUGCCAGUGCACCCUA .........-.....((((((((....))))))))....-------------......((((((((......)))))))).(....)...((((((....)))))).. ( -35.30) >DroSec_CAF1 63821 95 + 1 CAAAAGCAAGAAAAAUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCCUGGACAGUGCGUUUCAAAACUGUAAGGCAAGCGUA--CAC----------U- .....(((((.(((..((((.((....)).))))..))).)))))...((..(((((..(((((..........))))).)))))..))..--...----------.- ( -22.00) >DroSim_CAF1 72656 95 + 1 CAAAAGCAAGAAAAAUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCCUGGACAGUGCGUUUCAAAACUGUAAGGCAAGCGUG--CAC----------U- .....(((((.(((..((((.((....)).))))..))).)))))...((..(((((..(((((..........))))).)))))..))..--...----------.- ( -22.00) >DroEre_CAF1 64564 95 + 1 CAAAAGCAAGAAAAUUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCUUGGACGGUGCGUUUAAAAGUUGUAGGGCAAACCCA--UAA----------U- .....(((((.((((.((((.((....)).)))).)))).)))))...(((((..(((((((...))))))).)))))..(((....))).--...----------.- ( -21.70) >DroYak_CAF1 64201 95 + 1 CAAAAGCAAGAAAAACUUGAAACCACAGUCUCAACAUUUACUUAUAAUCGACUGCCCGGACGGUGCGUUUAAAAGUUGUGGAGCAAACGUA--UAA----------U- ......((((.....))))...(((((((....))....((((.(((.((((((......)))).)).))).)))))))))..........--...----------.- ( -14.70) >consensus CAAAAGCAAGAAAAAUUUGAAACCACAGUCUCAACAUUUACUUGUAAUCGACUGCCUGGACAGUGCGUUUCAAAACUGUAAGGCAAGCGUA__CAC__________U_ .....(((((.(((..((((.((....)).))))..))).))))).......(((((..(((((..........))))).)))))....................... (-11.10 = -11.62 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:29 2006