Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,236,155 – 15,236,275 |
Length | 120 |
Max. P | 0.513664 |
Location | 15,236,155 – 15,236,275 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.25 |
Mean single sequence MFE | -26.68 |
Consensus MFE | -21.68 |
Energy contribution | -22.24 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.03 |
Mean z-score | -1.32 |
Structure conservation index | 0.81 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.513664 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15236155 120 + 22224390 AAUCACGUUUAAAGUCCUGAAAUCAUUUAUAAAGCUUAAAGAGCUGAAUUCGGUAAGCUGAGGCGUCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACUGACGAUGAAGGUGAAAUU ..((((.((((.(((((...............((((((..(((.....)))..))))))..(...(((.(((((......))))).)))...)....))))).....)))).)))).... ( -29.60) >DroSec_CAF1 56485 120 + 1 AAUCACGUUUAAAGUCCAGAAAUCAUUUAUAAAGCUUAAAGAGCUGAAUACGGUAAGCUGUGGCGCCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACCAACGAUGAAGGUGAAAUU ..((((.((((..((((................(((...((.((((....))))...))..)))..((.(((((......))))).)).....))))(......)..)))).)))).... ( -25.60) >DroSim_CAF1 65294 120 + 1 AAUCACGUUUAAAGUCCUGAAAUCAUUUAUAAAGCUUAAAGAGCUGAAUUCGGUAAGCUGUGGCGCCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACCAGCGAUGAAGGUGAAAUU ..((((.((((.....(((((.(((........((((...))))))).)))))...((((.(.((((.((((.((((....))))))))....)).))..)))))..)))).)))).... ( -25.80) >DroEre_CAF1 57574 120 + 1 AAUCACGUUUAAAGUCUGGAAAUCAUUUAUAAAGCUUUAAGAGCUCAAUUCGGUAAGCUAAAGCGUCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACCACCGAUGAAGGUGAAAUG ..((((.((((..(((((...............(((((...((((..........))))))))).(((.(((((......))))).)))...)))))((....))..)))).)))).... ( -28.40) >DroYak_CAF1 57267 120 + 1 AAUCACGUUUAAAGUCUUGAAAUCAUUUAUAAAGCUUAAAGAGCCGAAUUCGUUAAGCCAAAGCGUCAUCAAUCAAUAACGAUUGUUGGAAAUGGACGGACCACCGACGAAGGUGAAAUU ..((((.(((............((((((.....((((((.(((.....))).)))))).......(((.(((((......))))).))))))))).(((....)))..))).)))).... ( -24.00) >consensus AAUCACGUUUAAAGUCCUGAAAUCAUUUAUAAAGCUUAAAGAGCUGAAUUCGGUAAGCUGAGGCGUCAUCAAUCAAUAACGAUUGUUGAAAACGGACGGACCAACGAUGAAGGUGAAAUU ..((((.((((..((((...............((((((..(((.....)))..)))))).......((.(((((......))))).)).....))))(......)..)))).)))).... (-21.68 = -22.24 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:25 2006