| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,235,959 – 15,236,119 |
| Length | 160 |
| Max. P | 0.793955 |
| Location | 15,235,959 – 15,236,079 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 86.93 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -17.46 |
| Energy contribution | -17.90 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.719854 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15235959 120 + 22224390 UUGCAAUAAUGUGGGCAAUGAAUGAAAUCCAUUUGUAGGUGUGCAAAAGUAUGCAGUGAAAAAUGCUUCAAGAAGCUCAAGCGGACAAUUGAAAUUUAAAAAUAGCAUUGCAUACUCUUA .........((((.((.(..((((.....))))..)..)).))))..(((((((((((......((((....))))((((........)))).............))))))))))).... ( -27.40) >DroSec_CAF1 56289 120 + 1 UUGCAAUAAUGUGGGCACUCAAUGAAAUCAAAUUGUAGGUGUGCAAAAGUAUGCAGUGAAAAAUGUUUCAAGAAGCUCAAACGGACAAUUGAAGUUUAAAAAUAACAUUGCAUACUCUUA ...........((.(((((((((........))))..))))).))..(((((((((((.....(((((....((((((((........))).)))))..))))).))))))))))).... ( -26.00) >DroEre_CAF1 57383 119 + 1 GUGCAAUAAUGUGCACACUGAAUAAAAUCACUCUGUAGGUGUGCAAAAGUAUGCAGUGAAAAAUGUGCCAAGAAGCCUAAGCAGACAAUUCAAGUUU-AAAAUAACAUUGCAUACUCUUA ...........((((((((..(((.........))).))))))))..(((((((((((........((..((....))..))((((.......))))-.......))))))))))).... ( -27.40) >DroYak_CAF1 57076 119 + 1 UUGCAAUAAUGUGGACACUGAAUAAAAUCACUUUGCUGCUGUGCAAAAGUGUGCAGUGAAAAAUGUUUGAGGAAGCUUAAAAGGACAAUUGAAGUUA-AAAAUAGCAUUGCAUACUCUUA (((((.....(..((...(((......))).))..).....))))).(((((((((((.......((((((....))))))..(((.......))).-.......))))))))))).... ( -26.60) >consensus UUGCAAUAAUGUGGACACUGAAUAAAAUCAAUUUGUAGGUGUGCAAAAGUAUGCAGUGAAAAAUGUUUCAAGAAGCUCAAACGGACAAUUGAAGUUU_AAAAUAACAUUGCAUACUCUUA (..((....))..).................(((((......)))))(((((((((((......((((....))))((((........)))).............))))))))))).... (-17.46 = -17.90 + 0.44)
| Location | 15,235,999 – 15,236,119 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.85 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.70 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.793955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15235999 120 + 22224390 GUGCAAAAGUAUGCAGUGAAAAAUGCUUCAAGAAGCUCAAGCGGACAAUUGAAAUUUAAAAAUAGCAUUGCAUACUCUUAGGCAGCCAAACAAGUGAUACGAAAACAGUAGCCAGUAGCA .(((...(((((((((((......((((....))))((((........)))).............)))))))))))....(((...((......)).(((.......))))))....))) ( -26.70) >DroSec_CAF1 56329 116 + 1 GUGCAAAAGUAUGCAGUGAAAAAUGUUUCAAGAAGCUCAAACGGACAAUUGAAGUUUAAAAAUAACAUUGCAUACUCUUAGGCAGCCAAACAAGUGAUACCAAAAC----GCCAGUAGCA .(((...(((((((((((.....(((((....((((((((........))).)))))..))))).)))))))))))....(((.......................----)))....))) ( -22.10) >DroSim_CAF1 65138 116 + 1 GUGCAAAAGUAUGCAGUGAAAAAUGCUUCAAGAAGCUCAAACGGACAAUUGAAGUUUAAAAAUAACAUUGCAUACUCUUGGGCAGCCAAACAAGUGAUACCAAAAC----GCCAGUAGCA ((.(((.(((((((((((......(((((((....((.....))....)))))))..........))))))))))).))).)).((...((..(((.........)----))..)).)). ( -28.09) >DroEre_CAF1 57423 115 + 1 GUGCAAAAGUAUGCAGUGAAAAAUGUGCCAAGAAGCCUAAGCAGACAAUUCAAGUUU-AAAAUAACAUUGCAUACUCUUAGGCAGCCAAACAAGUGAUAUCAAAGC----GCCAGUAGCA .(((...(((((((((((........((..((....))..))((((.......))))-.......)))))))))))....(((.((..................))----)))....))) ( -23.67) >DroYak_CAF1 57116 115 + 1 GUGCAAAAGUGUGCAGUGAAAAAUGUUUGAGGAAGCUUAAAAGGACAAUUGAAGUUA-AAAAUAGCAUUGCAUACUCUUAGGCAGCCAAGGAAGUGAUAGCAAUGC----GGCAGUAUCA .(((...(((((((((((.......((((((....))))))..(((.......))).-.......))))))))))).....)))(((......((....)).....----)))....... ( -25.10) >consensus GUGCAAAAGUAUGCAGUGAAAAAUGUUUCAAGAAGCUCAAACGGACAAUUGAAGUUUAAAAAUAACAUUGCAUACUCUUAGGCAGCCAAACAAGUGAUACCAAAAC____GCCAGUAGCA .(((...(((((((((((......((((....))))((((........)))).............))))))))))).....)))..........................((.....)). (-18.74 = -18.70 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:24 2006