Locus 5909

Sequence ID	X_DroMel_CAF1
Location	15,233,563 – 15,233,656
Length	93
Max. P	0.894006

overview

Window 1

Location	15,233,563 – 15,233,656
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	95.26
Mean single sequence MFE	-28.02
Consensus MFE	-23.44
Energy contribution	-24.48
Covariance contribution	1.04
Combinations/Pair	1.04
Mean z-score	-1.73
Structure conservation index	0.84
SVM decision value	0.98
SVM RNA-class probability	0.894006
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15233563 93 + 22224390
UGCAAAAGGGCCAUUCUACGGGCCGUCUGUGCGCCUAUUUUUAUGGCCAGGUCAAGGGCAAUUAAAAUGGGGAAUGCAGUUGACAAUUGCAAA
(((((...((((........))))(((..((((((((((((....(((........)))....))))))))...))))...)))..))))).. ( -31.30)
>DroSec_CAF1 53894 92 + 1
UGCAAAAGGACCUUUCUACGGGCCAACUGUGCGCCUAUUUUUAUGGCCAGGUCAAGGGCAAUUAAAAUGGGGAAUGCAGUUGACAA-UGCAAA
((((...((.(((......)))))((((((.(.((((((((....(((........)))....)))))))))...)))))).....-)))).. ( -27.80)
>DroSim_CAF1 62858 93 + 1
UGCAAAAGGGCCUUUCUACGGGCCAACUGUGCGCCUAUUUUUAUGGCCAGGUCAAGGGCAAUUAAAAUGGGGAAUGCAGUUGACAAUUGCAAA
(((((...(((((......)))))((((((.(.((((((((....(((........)))....)))))))))...)))))).....))))).. ( -32.30)
>DroEre_CAF1 55012 91 + 1
UG-AAAAGGGUCU-UCUACGGGCCGCCUGUGCGCCUAUUUUUAUGGCCAGGUCAAGGGCAAUUAAAACGGGGAAUGCAGUUGACAAUUGCAAA
..-....((((..-((....))..)))).((((((.........)))...(((((..(((.((........)).)))..)))))....))).. ( -21.70)
>DroYak_CAF1 53732 92 + 1
UG-AAAAGGGCCUUUCUACGGGCCGCCUGUGCGCCUAUUUUUAUGGCCAGGUCAAGGGCAAUUAAAAUGGGGAAUGCAGUUGACAAUUGCAAA
..-.....(((((......)))))((....)).((((((((....(((........)))....))))))))...((((((.....)))))).. ( -27.00)
>consensus
UGCAAAAGGGCCUUUCUACGGGCCGACUGUGCGCCUAUUUUUAUGGCCAGGUCAAGGGCAAUUAAAAUGGGGAAUGCAGUUGACAAUUGCAAA
.(((....(((((......))))).....))).((((((((....(((........)))....))))))))...((((((.....)))))).. (-23.44 = -24.48 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:22 2006