Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,228,305 – 15,228,399 |
Length | 94 |
Max. P | 0.708529 |
Location | 15,228,305 – 15,228,399 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 79.86 |
Mean single sequence MFE | -37.25 |
Consensus MFE | -21.01 |
Energy contribution | -22.73 |
Covariance contribution | 1.73 |
Combinations/Pair | 1.21 |
Mean z-score | -2.00 |
Structure conservation index | 0.56 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708529 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15228305 94 + 22224390 GCCAUUUGGGCCAGGAUGCGAUGCACCU---GCCUGGCUGGCAGCGAAAUGCGAAUCAAUUUUGCUGCUAAUGUUGGGCGGUGUGUUGACCUAAGUG (((.....))).(((...(((((((((.---(((..((((((((((((((........))))))))))))..))..)))))))))))).)))..... ( -45.00) >DroVir_CAF1 65020 85 + 1 ACCUGUC---GCAGCAGCUGUCGCACCG---GCUGCUGCUGCUCCAA------AGUCCACCUUGCUGCUGAUGUUGGGCGGCGUGUGUGCCUAGGGG .((((..---((((((((.((((...))---)).)))))))).....------.(..(((..(((((((.......))))))).)))..).)))).. ( -37.50) >DroSec_CAF1 48744 94 + 1 ACCAUUUGUACCAGGAUGCGAUGCACCU---GCCUGGCUGGCAGCGAAAUGCGAAUCUAUUUUGCUGCUGAUGUUGGGCGGCGUGUUGACCUAAGUG ............(((...((((((.((.---(((..((.((((((((((((......))))))))))))...))..))))).)))))).)))..... ( -37.40) >DroSim_CAF1 58038 94 + 1 ACCAUUUGUACCAGGAUGCGAUGCACCU---GCCUGGCUGGCAGCGAAAUGCGAAUCUAUUUUGCUGCUGAUGUUGGGCGGCGUGUUGACCUAAGUG ............(((...((((((.((.---(((..((.((((((((((((......))))))))))))...))..))))).)))))).)))..... ( -37.40) >DroEre_CAF1 49960 97 + 1 ACCAUUUGAGCCAGGAUGCGAUCCUCCUGCUGCCUGGCCGGCACCGAAAUGCGAGUCUAUCUUGCUGCUGAUGUUGGGCGGCGUGUUGACCUGAGUG .........((((((...((((.....(((((((..(((((((.......(((((.....))))))))))..))..))))))).)))).)))).)). ( -33.31) >DroYak_CAF1 48614 94 + 1 ACCAUUCGAGCCGGGAUGCGAUCCACCC---GCCUGGCCGGCACCGAAAUGCGAAUCUAUUUUGCUGCUGAUGUUGGGCGGCGUGUUGACCUAAGUG .((((((......))))).)...(((((---(((..(((((((.(((((((......))))))).)))))..))..))))).)))............ ( -32.90) >consensus ACCAUUUGAGCCAGGAUGCGAUGCACCU___GCCUGGCCGGCACCGAAAUGCGAAUCUAUUUUGCUGCUGAUGUUGGGCGGCGUGUUGACCUAAGUG ............(((...((((((.((....(((..(((((((.(((((((......))))))).)))))..))..))))).)))))).)))..... (-21.01 = -22.73 + 1.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:15 2006