| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,224,539 – 15,224,643 |
| Length | 104 |
| Max. P | 0.656933 |
| Location | 15,224,539 – 15,224,643 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 88.21 |
| Mean single sequence MFE | -53.35 |
| Consensus MFE | -42.16 |
| Energy contribution | -43.00 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15224539 104 + 22224390 GU---UGUCCUCCUCCUCCGGCGGCUCAUCGUCGUCCACCGACAGCUGGGGCAUCUUCUUCUGGCGCCGGCUGAUGGGCAGAACCAGUGCGGAGGAGGAUGAGGAUG---- ((---(.((.((((((((((((.(((((((((((.....))))((((((.((...........)).))))))))))))).......)).)))))))))).)).))).---- ( -52.20) >DroSec_CAF1 44888 104 + 1 GA---UGUCCUCCUCCUCCGGCGGCUCAUCGUCGUCCACCGACAGCUGGGGCAUCUUCUUCUGGCGCCGGCUGAUGGGCAGCACCAGGGCGGAGGAGGAUGAGGAUG---- ..---.(((((((((((((.((.(((((((((((.....))))((((((.((...........)).))))))))))))).))....))).)))))))))).......---- ( -54.90) >DroSim_CAF1 44721 104 + 1 GU---UGUCCUCCUCCUCCGGCGGCUCAUCGUCGUCCACCGACAGCUGGGGCAUCUUCUUCUGGCGCCGGCUGAUGGGCAGCACCAGGGCGGAGGAGGAUGAGGAUG---- .(---..((((((((((((.((.(((((((((((.....))))((((((.((...........)).))))))))))))).))....))).)))))))))..).....---- ( -56.10) >DroEre_CAF1 46233 108 + 1 GU---UGUCCUCCUCCUCCGGCGGCUCGUCGUCGUCCACCGACAGCUGAGGCAUCUUCUUCUGGCGCCGGCUGAUGGGCAGGACCAAGGCGGAGGAGGAUGAGGAUGGCGC ((---..(((((((((((((.((((.....)))((((.(((.(((((..(((..(.......)..)))))))).)))...))))...).))))))))))...)))..)).. ( -54.40) >DroYak_CAF1 44810 108 + 1 GU---UGUCCUCCUCCUCCGGCGGCUCAUCGUCGUCCACCGACAGCUGGGGCAUCUUCUUCUGGCGCCGGCUGAUGGGCAGUACCAUGGCGGAGGAGGAUAAGGAUGAGGA .(---(((((((((((.(((((.(((((((((((.....))))((((((.((...........)).))))))))))))).))....))).))))))))))))......... ( -54.10) >DroAna_CAF1 46551 107 + 1 GUUGUUGUCCUCUUCCUCGGCCGGCUCGUCGUCGUCCACGGACAGCUGGGACAUCUUCUUCUGGCGCCGGCCCAGCGGCAGGACCAGGGACGAGGCGGAAGCCAGGG---- (((.(((((((.(..((.(((((((........(((....))).((..(((.......)))..))))))))).))..).)))).))).)))..(((....)))....---- ( -48.40) >consensus GU___UGUCCUCCUCCUCCGGCGGCUCAUCGUCGUCCACCGACAGCUGGGGCAUCUUCUUCUGGCGCCGGCUGAUGGGCAGCACCAGGGCGGAGGAGGAUGAGGAUG____ ......(((((((((((((((((((.....))))))..(((.(((((((.((...........)).))))))).))).............)))))))))...))))..... (-42.16 = -43.00 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:14 2006