Locus 5901

Sequence ID X_DroMel_CAF1
Location 15,215,515 – 15,215,617
Length 102
Max. P 0.707374
window9580

overview

Window 0

Location 15,215,515 – 15,215,617
Length 102
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 77.29
Mean single sequence MFE -33.44
Consensus MFE -21.96
Energy contribution -22.02
Covariance contribution 0.06
Combinations/Pair 1.25
Mean z-score -1.35
Structure conservation index 0.66
SVM decision value 0.37
SVM RNA-class probability 0.707374
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15215515 102 - 22224390
-----------GGUUUUCA---U---UACAGACUGGCAGCAAUUCGUGAGCAACAAGCUCAAGGGCUGGGAGAUGAUGAACCUCAGCUGGGCGCGCAACUUCACGGGCAGCAUCAAGGU
-----------((((((((---(---(.(.....).((((......(((((.....)))))...))))...))))).)))))...(((..((.((........)).)))))........ ( -26.20)
>DroVir_CAF1 49965 107 - 1
------AAU---UCUCUCU---CCCGCACAGAUUGGCAACAGUUUGUCAGCAAUAAGCUGAAGGGCUGGGAGCUCAUGAAUCUCAGCUGGGCGCGCAAUUUUACGGGCAGUAUUAAGGU
------...---.....((---((((...((((((((..(((((..(((((.....)))))..)))))...(((((((.....))..))))))).))))))..)))).))......... ( -33.90)
>DroGri_CAF1 49477 111 - 1
UUAUUUGUU--GUGUUUCU---U---UGCAGAUUGGCAACAGUUUGUCAGCAAUAAGCUCAAGGGCUGGGAGACAAUGAAUCUCAGCUGGGCACGCAAUUUCACUGGCAGCAUCAAGGU
.....((((--((......---(---(((((((((....))))))).)))......(((((...(((((((.........))))))))))))..............))))))....... ( -31.60)
>DroWil_CAF1 52362 102 - 1
-----------GUUUAUUU---U---GACAGAUUGGCAACAGUUUGUUAGCAAUAAGCUUAAGGGCUGGGAGCUAAUGAAUCUUAGCUGGGCCCGCAAUUUUACUGGCAGUAUUAAGGU
-----------((((((((---(---(((((((((....))))))))))).)))))))....(((((...((((((......)))))).)))))((.....(((.....))).....)) ( -33.60)
>DroMoj_CAF1 57040 112 - 1
CUAUUCGUU---UCUCCCU---UUC-AACAGAUUGGCAACAGUUUGUGAGCAACAAGCUCAAAGGUUGGGAGCUCAUGAAUCUUAGCUGGGCGCGCAAUUUCACGGGCAGCAUCAAGGU
..((((((.---.(((((.---.((-.((((((((....))))))))((((.....))))...))..)))))...))))))....(((..((.((........)).)))))........ ( -36.50)
>DroAna_CAF1 37993 110 - 1
------AAUCUGAUCUUCCGGCC---CACAGAUUGGCAGCAAUUCGUGAGCAAUAAGCUCAAGGGCUGGGAGCUGAUGAACCUCAGCUGGGCCCGCAACUUCACCGGCAGCAUCAAGGU
------.((((...(((((((((---(((..((((....))))..))((((.....))))..)))))))))).(((((.......(((((.............)))))..))))))))) ( -38.82)
>consensus
________U__GUUUUUCU___U___CACAGAUUGGCAACAGUUUGUGAGCAAUAAGCUCAAGGGCUGGGAGCUAAUGAAUCUCAGCUGGGCGCGCAAUUUCACGGGCAGCAUCAAGGU
...........................((((((((....))))))))..((.....((((...((((((((.........))))))))))))..((..........)).))........ (-21.96 = -22.02 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:11 2006