Locus 5900

Sequence ID X_DroMel_CAF1
Location 15,213,383 – 15,213,476
Length 93
Max. P 0.937611
window9579

overview

Window 9

Location 15,213,383 – 15,213,476
Length 93
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 78.81
Mean single sequence MFE -23.12
Consensus MFE -15.19
Energy contribution -16.54
Covariance contribution 1.35
Combinations/Pair 1.16
Mean z-score -2.16
Structure conservation index 0.66
SVM decision value 1.26
SVM RNA-class probability 0.937611
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15213383 93 - 22224390
--AAAAUCAGAAAAAGAGAG-AGAGAAAAUAG----AGAGGCAGAAAUGUGGAGGAAAAAGAAUUUGUGCCAUAUGCUGGACAU----------UGCGAUGCUCGG----CUUU
--..................-...........----...((((.((((..............)))).))))....((((..(((----------....)))..)))----)... ( -16.24)
>DroSec_CAF1 33855 101 - 1
--AAAAUCAGAAAAAGAG---AGAGAAAAUAG----AGAGGCAGAAAUGCGGAGGAAAAAGAAUUUGUGCCAUAUGCUGGACAUUGCGGGGCAUUGCGAUGCUCGG----CUUU
--................---...........----...((((.((((.(..........).)))).))))....((((..((((((((....))))))))..)))----)... ( -24.70)
>DroSim_CAF1 33058 101 - 1
--AAAAUCAGAAAAAGAG---AGAGAAAAUAG----AGAGGCAGAAAUGCGGAGGAAAAAGAAUUUGUGCCAUAUGCUGGACAUUGCGGGGCAUUGCGAUGCUCGG----CUUU
--................---...........----...((((.((((.(..........).)))).))))....((((..((((((((....))))))))..)))----)... ( -24.70)
>DroEre_CAF1 35231 105 - 1
--AAAAUCACAAAAAGAG---AGAGAAAAUAGAGAGAGAGGCAGAAAUGCGGAGGAAAAAGAAUUUGUGCCAUAUGCCGGACAUUGCGGGGCAUUGCGAUGCUCGG----CUUU
--................---..................((((.((((.(..........).)))).))))....((((..((((((((....))))))))..)))----)... ( -26.90)
>DroYak_CAF1 33422 107 - 1
--AAAGGCGCAAAAAGAGAG-AGAGAAAACAGAGAGAGAGGCAGAAAUGCGGAGGAAAAAGAAUUUGUGCCAUAUGCUGGACAUUGCGGGGCAUUGCGAUGCUCGU----CGCU
--...((((((((.......-.(......)..........(((....))).............))))))))....((((..((((((((....))))))))..)).----.)). ( -25.40)
>DroAna_CAF1 36078 98 - 1
ACAUAUUCUCAAACUGAAACAACAACAAAUUU----UAAGGUAGAAAU---------AAAAAAAUUGUGCCAUAUGCCGGAC---GCAGGGCAUUGCGAUGCUCCGGCCACGUU
.......................(((......----...((((.((..---------.......)).))))....((((((.---(((..((...))..)))))))))...))) ( -20.80)
>consensus
__AAAAUCACAAAAAGAG___AGAGAAAAUAG____AGAGGCAGAAAUGCGGAGGAAAAAGAAUUUGUGCCAUAUGCUGGACAUUGCGGGGCAUUGCGAUGCUCGG____CUUU
.......................................((((.((((..............)))).)))).....(((..((((((((....))))))))..)))........ (-15.19 = -16.54 +   1.35)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:10 2006