Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,660,875 – 1,660,969 |
Length | 94 |
Max. P | 0.977884 |
Location | 1,660,875 – 1,660,969 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 79.38 |
Mean single sequence MFE | -40.90 |
Consensus MFE | -25.35 |
Energy contribution | -25.13 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.13 |
Mean z-score | -1.84 |
Structure conservation index | 0.62 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650801 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1660875 94 + 22224390 ---------UGGAGCAGGAGCAGCACCAGGACGAG--CCAGGACCAGG--CAGGCACCAAGACCACAGCCAAGUCCAGCUCCCGGUC------CAGCUCCUGGUCCUGGUCAG ---------.(((.(((((((.(.(((.((..(((--(..((((..((--(.((........))...)))..)))).))))))))).------).))))))).)))....... ( -41.00) >DroSec_CAF1 25785 94 + 1 ---------UGGAGCAGAAGCAGCACCAGGACGAG--CCAGGACCAGG--CAGGCACCAAGACCACAGCCAAGUCCAGCUCCCGGUC------CAGCUCCUGGUCCACGUUAG ---------((((.(((.(((.(.(((.((..(((--(..((((..((--(.((........))...)))..)))).))))))))).------).))).))).))))...... ( -35.10) >DroYak_CAF1 26370 113 + 1 UCCAGGCCCAGGAGCAGGAGCAGCACCAGGACGAGGGCCAUGGGCAGGACCAGGCACCAAGACCCCAGUCAAGUCCAGCUCCAGCUCCGGUUUCGGCUCCUCGUCCAGGUCAG ....((((..(((..((((((...(((.((((..(((((.(((......)))))).))..(((....)))..))))(((....)))..)))....))))))..))).)))).. ( -46.60) >consensus _________UGGAGCAGGAGCAGCACCAGGACGAG__CCAGGACCAGG__CAGGCACCAAGACCACAGCCAAGUCCAGCUCCCGGUC______CAGCUCCUGGUCCAGGUCAG ..........(((.(((((((.......((.......))..((((.((....(((............))).((.....)))).))))........))))))).)))....... (-25.35 = -25.13 + -0.22)
Location | 1,660,875 – 1,660,969 |
---|---|
Length | 94 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 79.38 |
Mean single sequence MFE | -50.50 |
Consensus MFE | -30.98 |
Energy contribution | -31.10 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.11 |
Mean z-score | -2.72 |
Structure conservation index | 0.61 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.977884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1660875 94 - 22224390 CUGACCAGGACCAGGAGCUG------GACCGGGAGCUGGACUUGGCUGUGGUCUUGGUGCCUG--CCUGGUCCUGG--CUCGUCCUGGUGCUGCUCCUGCUCCA--------- .......(((.(((((((.(------.(((((((((((((((.(((...(((......))).)--)).))))).))--)...))))))).).))))))).))).--------- ( -51.30) >DroSec_CAF1 25785 94 - 1 CUAACGUGGACCAGGAGCUG------GACCGGGAGCUGGACUUGGCUGUGGUCUUGGUGCCUG--CCUGGUCCUGG--CUCGUCCUGGUGCUGCUUCUGCUCCA--------- ......((((.(((((((.(------.(((((((((((((((.(((...(((......))).)--)).))))).))--)...))))))).).))))))).))))--------- ( -48.30) >DroYak_CAF1 26370 113 - 1 CUGACCUGGACGAGGAGCCGAAACCGGAGCUGGAGCUGGACUUGACUGGGGUCUUGGUGCCUGGUCCUGCCCAUGGCCCUCGUCCUGGUGCUGCUCCUGCUCCUGGGCCUGGA ....((.((.(.((((.(((....))).((.(((((.(.(((.(((.((((((.(((.((........))))).)))))).)))..))).).))))).)))))).).)).)). ( -51.90) >consensus CUGACCUGGACCAGGAGCUG______GACCGGGAGCUGGACUUGGCUGUGGUCUUGGUGCCUG__CCUGGUCCUGG__CUCGUCCUGGUGCUGCUCCUGCUCCA_________ .......(((.(((((((........(((((((....(((((.(((....)))..))).))....)))))))..((.......)).......))))))).))).......... (-30.98 = -31.10 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:41 2006