Locus 5899

Sequence ID X_DroMel_CAF1
Location 15,212,134 – 15,212,254
Length 120
Max. P 0.988621
window9578

overview

Window 8

Location 15,212,134 – 15,212,254
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 95.39
Mean single sequence MFE -41.73
Consensus MFE -35.77
Energy contribution -36.05
Covariance contribution 0.28
Combinations/Pair 1.05
Mean z-score -2.72
Structure conservation index 0.86
SVM decision value 2.13
SVM RNA-class probability 0.988621
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15212134 120 + 22224390
UGGCAUGCAGCGACGCAUUUGCUCCGAACUUCGAUAGGAGGGACUGUAGCGUCCUGGAAAACAACUGGGCGCUGACAUUUUCAUUUUAUCCGUCGUCGAAUACAUCGACAUUGUCAUGCA
..((((((((.(((((....))..........((((((((..(.((((((((((.(........).))))))).))).)..).))))))).)))(((((.....))))).))).))))). ( -41.40)
>DroVir_CAF1 43931 120 + 1
UGGCAUACAGCGCCGCAUUUGCUCCGAACUUCGAUAGGAUGGACUGUAGCGUCCUGGAAAACAACUGGGCGCUGACAUUUUCAUUUUAUCCGUCGUCGAAUACAUCGACAUUGUCAUGCA
..((((((((((..((....))..))......(((((((((((.((((((((((.(........).))))))).)))..)))))))))))....(((((.....))))).)))).)))). ( -38.20)
>DroGri_CAF1 44725 120 + 1
UGGCAUACAGCGUCGCAUCUGCUCCGAACUUCGAUAGGAUGGACUGUAGCGUCCUGGAAAACAACUGGGCGCUGACAUUUUCAUUUUAUCCGUUGUCGAAUACAUCGACAUUGUCAUACA
(((((.....((..((....))..))......(((((((((((.((((((((((.(........).))))))).)))..)))))))))))...((((((.....)))))).))))).... ( -37.20)
>DroWil_CAF1 47566 120 + 1
UGGCAUACAGCGUCGCAUUUGUUCUGAACUUCGAUACGAUGGACUGUAGCGUCCUGGAAAACAACUGGGCGCUGACAUUUUCAUUUUAUCCGUUGUCGAAUACAUCGACAUUGUCAUGCA
..((((((((.((((.((.(((((.((.....((((.((((((.((((((((((.(........).))))))).)))..)))))).)))).....))))))).)))))).)))).)))). ( -39.30)
>DroMoj_CAF1 52919 120 + 1
UGGCAUGCAGCGUCGCAUUUGCUCCGAACUUCGAUAGGAUGGACUGUAGCGUCCUGGAAAACAACUGGGCGCUGACAUUUUCAUUUUAUCCGUCGUCGAGUACAUCGACAUUGUCAUGCA
..((((((((.((((.((.(((((.((.....(((((((((((.((((((((((.(........).))))))).)))..))))))))))).....))))))).)))))).))).))))). ( -46.40)
>DroAna_CAF1 34610 120 + 1
UGGCAUGCAGCGGCGCAUCUGCUCCGAACUCCGAUAGGAGGGACUGUAGCGUCCAGGAAAACAACUGGGCGCUGACAUUUUCAUUUUAUCCGUCGUCGAGUACAUCGACAUUGUCAUGCA
..(((((((((((.((....)).)))......((((((((..(.((((((((((((........))))))))).))).)..).)))))))....(((((.....))))).))).))))). ( -47.90)
>consensus
UGGCAUACAGCGUCGCAUUUGCUCCGAACUUCGAUAGGAUGGACUGUAGCGUCCUGGAAAACAACUGGGCGCUGACAUUUUCAUUUUAUCCGUCGUCGAAUACAUCGACAUUGUCAUGCA
..((((((((((..((....))..........(((((((((((.((((((((((.(........).))))))).)))..)))))))))))))).(((((.....)))))..))).)))). (-35.77 = -36.05 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:09 2006