Locus 5897

Sequence ID X_DroMel_CAF1
Location 15,191,017 – 15,191,123
Length 106
Max. P 0.738463
window9575

overview

Window 5

Location 15,191,017 – 15,191,123
Length 106
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 73.08
Mean single sequence MFE -18.14
Consensus MFE -5.50
Energy contribution -6.50
Covariance contribution 1.00
Combinations/Pair 1.33
Mean z-score -1.80
Structure conservation index 0.30
SVM decision value 0.44
SVM RNA-class probability 0.738463
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15191017 106 + 22224390
AAAGGAUGCUAAUCUGUAACUUAAAGCUGAA--GAAAGACGUCAGAAAAAAAAAACGGAAAAAUGCUUACUAUUAAAGAAAUGCACAAGUUCAGUUAUAUUAUGAACA
..((...((...(((((.........((((.--(.....).)))).........))))).....))...)).................(((((.........))))). ( -13.07)
>DroSec_CAF1 11625 100 + 1
AAAGGAUGCUAAGCUGUAACUCAAAGCUGCG--GAAAAACGUCAGAAAA----AAUGGA--AAUGCUUAGUAUUAAAGAAAUGCACAAGUUCAGUUAUAUUAUGAACA
....((((((((((.....(......(((((--......)).)))....----...)..--...))))))))))..............(((((.........))))). ( -21.52)
>DroSim_CAF1 10167 100 + 1
AAAGGAUGCUAAGCUGUAACUUAAAGCUGAG--GAAAAACGUCAGAAAG----AACGGA--AAUGUUUAGUAUUAAAGAAAUGCACAAGUUCAGUUAUAUUAUGAACA
....((((((((((............((((.--(.....).))))....----......--...))))))))))..............(((((.........))))). ( -19.01)
>DroEre_CAF1 11443 89 + 1
AUAGGAUGCUAAGCUGUAACUUAAAUCUGAA--GACGAACGUCG------------GAA--AAUACUCUGUAUAAAGUAAAUAUUUAGGUUCGGC---AAUACAUAUG
............((((.(((((((((.....--(((....))).------------...--..((((........))))...)))))))))))))---.......... ( -16.30)
>DroYak_CAF1 10968 99 + 1
AAAGGAUGCUAAGCUGUAACUUAAAGCUUAAAGGCAGAACGUCAGCAAA----A--GAA--AAUACUUGGCAUUAAAUAAGUAUUUGCAUUCGCU-UUAUUACGAACA
...((((((...((((.........(((....))).......))))...----.--..(--((((((((........)))))))))))))))...-............ ( -20.79)
>consensus
AAAGGAUGCUAAGCUGUAACUUAAAGCUGAA__GAAAAACGUCAGAAAA____AA_GGA__AAUGCUUAGUAUUAAAGAAAUGCACAAGUUCAGUUAUAUUAUGAACA
....((((((((((..................................................))))))))))..............(((((.........))))). ( -5.50 =  -6.50 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:07 2006