Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 15,189,854 – 15,189,946 |
Length | 92 |
Max. P | 0.708051 |
Location | 15,189,854 – 15,189,946 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 78.97 |
Mean single sequence MFE | -29.93 |
Consensus MFE | -23.69 |
Energy contribution | -23.67 |
Covariance contribution | -0.02 |
Combinations/Pair | 1.17 |
Mean z-score | -1.40 |
Structure conservation index | 0.79 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.708051 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15189854 92 + 22224390 UCUUUCCGCCCUCCAGUGGCCAUGCCAUUUUCAUUCGGUUGGAGGGACCUU-UUGGUAGGGGGAAUCUCUGAAUUCGGAGGCUCAGCGGACUG ....((((((((((((((((...)))))...........))))))..((((-(....)))))((..(((((....)))))..)).)))))... ( -33.90) >DroSim_CAF1 9019 83 + 1 UCUUUCCGCCCUCCAGUGGCCAUGCCAUUUUCAUUCGGUCGGAGGGACCUUUUUGGUAGGGGGAAUCUCUGAAUUCGGAGGCU---------- ...((((.((((((((((((...)))))........((((.....))))....))).))))))))((((((....))))))..---------- ( -31.10) >DroYak_CAF1 9737 80 + 1 UCCCUCUGCCCUCCAGUGGCCAUGCCAUUUCCAUUCGGUUGUAGGGAACU-----GG-AAGGGAAUCUACGAAUUCGGAGGCUCGG------- ..((((..(((((((((..((.(((.....((....))..))).)).)))-----))-.))))......((....)))))).....------- ( -24.80) >consensus UCUUUCCGCCCUCCAGUGGCCAUGCCAUUUUCAUUCGGUUGGAGGGACCUU_UUGGUAGGGGGAAUCUCUGAAUUCGGAGGCUC_G_______ .......(((.(((((((((...)))))).........(((((((..(((((.....)))))...)))))))....))))))........... (-23.69 = -23.67 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:06 2006