| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 15,181,403 – 15,181,523 |
| Length | 120 |
| Max. P | 0.515532 |
| Location | 15,181,403 – 15,181,523 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.11 |
| Mean single sequence MFE | -47.25 |
| Consensus MFE | -28.75 |
| Energy contribution | -28.67 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 15181403 120 + 22224390 CUACUCCAGACUUGGGCACAGUGCGGCGUCAGCAAGAAAGAGAUGGAAGUGCUGCGACGGCUGGGCUUCGAGAAGCCCACGCCCAUCCAGUGCCAGGCCAUACCGGCCAUCAUGUCCGGA ....(((.(((.(((((((.(((((((.((..(........)...))...))))).))((((((((((....))))))).)))......))))).((((.....))))..)).))).))) ( -50.50) >DroVir_CAF1 4518 119 + 1 UCUU-GCAGACGUGGGCACAGUGCGGCGUUAGCAAGAAAGAGAUGGACGUGCUGCGCAAGUUGGGCUUCGAGAAGCCAACGCCCAUACAGUGCCAGGCGAUACCGGCGAUAAUGUCUGGG ....-.(((((((((((...((((((((((..(........)...)))..)))))))..(((((.(((....))))))))))))))....((((.((.....)))))).....))))).. ( -45.30) >DroGri_CAF1 4969 120 + 1 CUUUGUUAGACGUGGGCGCAAUGUGGCGUUAGCAAGAAGGAAAUGGAUGUGUUGCGGAAACUGGGCUUUGAGAAGCCAACACCGAUUCAGUGCCAAGCGAUACCCGCCAUAAUGUCUGGC ....(((((((((.((((...(((.((....(((.....(((.(((.(((.....(....)..(((((....))))).)))))).)))..)))...)).)))..))))...))))))))) ( -39.40) >DroMoj_CAF1 3900 120 + 1 CCUUCACAGACGUGGGCGCAAUGUGGCGUCAGCAAAAAGGAGAUGGACGUGCUGCGCAAGUUGGGCUUCGAGAAACCUACGCCCAUACAGUGCCAGGCGAUACCGGCGAUAAUGUCUGGG ......(((((((.(((((......(((.(((((....(........).))))))))..(((((((....((....))..))))).)).))))).(.((....)).)....))))))).. ( -41.70) >DroAna_CAF1 4286 120 + 1 GUCUUCCAGACGUGGGCGCAGUGCGGCGUCAGCAAAAAGGAAAUGGACGUGCUCCGCCGGCUGGGCUUCGAGAAGCCGACGCCGAUCCAGUGCCAGGCCAUUCCGGCCAUCAUGUCCGGA ....(((.(((((((((((....((((((((((.....(((.((....))..)))....))).(((((....)))))))))))).....))))).((((.....))))..)))))).))) ( -56.00) >DroPer_CAF1 4269 117 + 1 C---CAUAGACAUGGGCACAGUGCGGCGUCAGCAAGAAAGAGAUGGAUGUGCUGCGGAAGCUGGGCUUUGAAAAGCCCACGCCAAUCCAGUGCCAGGCCAUACCGGCCAUCAUGUCCGGA (---(...(((((((((((...((((((.((.((.........))..))))))))(((.(((((((((....))))))).))...))).))))).((((.....))))..)))))).)). ( -50.60) >consensus CUUUCACAGACGUGGGCACAGUGCGGCGUCAGCAAGAAAGAGAUGGACGUGCUGCGCAAGCUGGGCUUCGAGAAGCCAACGCCCAUCCAGUGCCAGGCCAUACCGGCCAUAAUGUCCGGA ........(((((.(((((.....((((((((((....(....).....))))).........(((((....))))).)))))......)))))..(((.....)))....))))).... (-28.75 = -28.67 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:03 2006