Locus 5892

Sequence ID X_DroMel_CAF1
Location 15,170,669 – 15,170,789
Length 120
Max. P 0.523499
window9566

overview

Window 6

Location 15,170,669 – 15,170,789
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.56
Mean single sequence MFE -43.78
Consensus MFE -25.75
Energy contribution -26.67
Covariance contribution 0.92
Combinations/Pair 1.23
Mean z-score -1.58
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.523499
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15170669 120 - 22224390
CGCCGCAUCAUAGCCAGCCGAAACGAUGAUCAGCUCCGGCUGGAAUUCCAGGGCCACCGGCAGCAGCAGCUGCUGGAAAAUGGCCAGGUAAUCGCCAUUGGUCAUACCCGUCGCAUUCAA
.((.((.......(((((((...(........)...))))))).......(((...((((((((....))))))))...((((((((((....)))..))))))).))))).))...... ( -47.10)
>DroVir_CAF1 1782 120 - 1
GGCCGCAUCAUAGCCGGCCGAGACAAUAAUCAGCUCCGGCUGAUAUUCCAUGGCAACCGGCAGCAGCAGCUGCUGGAAUAUGGCCAUAUAAUCGCCAUUGCCCAAGCCCUUGGCAUUCAG
((((((......).)))))(((......((((((....)))))).....(((((..((((((((....))))))))......)))))......((((..((....))...)))).))).. ( -46.40)
>DroWil_CAF1 945 120 - 1
GGCGGCAUCAUAGCCAGCCGAUACUAAAAUCAAUUCCGGUUGGAAUUCCAAGGCAACUGGCAUCAAGAGCUGCUGGAAUAUGGCCAAAUAAUCACCAUUUGUCAUCCCCGUUGCAUUGAG
((((((......))).)))(((......)))((((((....)))))).(((.(((((.((((.(....).))))((...(((((.((((.......)))))))))..))))))).))).. ( -30.80)
>DroMoj_CAF1 1181 120 - 1
GGCGGCAUCAUAGCCAGCAGAGACAAUGAUCAGCUCGGGCUGAUAUUCCAUGGCCACCGGCAGCAGCAGCUGCUGGAAGAUGGCCAAGUAAUCGCCGUUGCCCAUGCCCUUGGUAUUCAG
((((((......))).((....((....((((((....))))))......((((((((((((((....))))))))....)))))).))....))....))).(((((...))))).... ( -45.80)
>DroAna_CAF1 1098 120 - 1
CGCGGCGUCGUAGCCAGCGGAAACCAUGAUCAGCUCCGGCUGGAACUCCAGGGCCACCGGCAGGAGCAGUUGCUGGAAGAUGGCCAGGUAGUCGCCGUUCGUCAUUCCAGUGCUGUUCAA
((((((......))).)))..............((((((.(((..(....)..))))))).))(((((((.(((((((((((..(.(((....))))..)))).)))))))))))))).. ( -49.40)
>DroPer_CAF1 1417 120 - 1
GGCCGCAUCAUAGCCGGCCGAGACGAUGAUCAGUUCUGGCUGGUACUCCAUUGCCACGGGCAGUAGCAGCUGCUGGAAGAUGGCCAUGUAGUCCCCGUCGCCCAUUCCUGUCUCAUUGAG
((((((......).)))))((((((..(((..((...(((.((.(((.(((.(((((.((((((....)))))).)....)))).))).))).)).)))))..)))..))))))...... ( -43.20)
>consensus
GGCCGCAUCAUAGCCAGCCGAGACAAUGAUCAGCUCCGGCUGGAAUUCCAUGGCCACCGGCAGCAGCAGCUGCUGGAAGAUGGCCAAGUAAUCGCCAUUGCCCAUGCCCGUGGCAUUCAG
(((.......((((((((.((........)).)))..))))).........(((((((((((((....))))))))....)))))........)))........................ (-25.75 = -26.67 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:59 2006