Locus 5890

Sequence ID X_DroMel_CAF1
Location 15,167,991 – 15,168,089
Length 98
Max. P 0.840697
window9562

overview

Window 2

Location 15,167,991 – 15,168,089
Length 98
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 88.64
Mean single sequence MFE -31.96
Consensus MFE -27.60
Energy contribution -27.35
Covariance contribution -0.25
Combinations/Pair 1.26
Mean z-score -1.75
Structure conservation index 0.86
SVM decision value 0.75
SVM RNA-class probability 0.840697
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15167991 98 + 22224390
------------ACAAACAUGGUGAGUACUGGCAGAUUAUUGCCGCCGUUUUCGAGUUGUUUUGGCCAAAAGCGGCAGUGGCAACCAAACAGCAACACCCACACACCACA
------------.......(((((.((...(((((....)))))((.((((..(.((((((...(((......)))...))))))))))).)).......)).))))).. ( -28.30)
>DroSec_CAF1 5604 110 + 1
UCCCGUUUUACCACAAACAUGGUGAGUGCUGGCGGAUUAUUGCCGCCAGUUUCGAGUUGUUUUGGUCAAAAGCGGCAGUGGCAACCAAACAGCAACACCCACACACCACA
..(((((((((((.(((((...((((.((((((((.......))))))))))))...)))))))))..)))))))..((((........................)))). ( -35.46)
>DroSim_CAF1 6557 110 + 1
UCCCGUUUUCCCACAAACAUGGUAAGUGCUGGCGGAUUAUUGCCGCCAGUUUCGAGUUGUUUUGGCCAAAAGCGGCAGUGGCAACCAAACAGCAACACCCACACACCACA
....((((......)))).((((..((((((((((.......)))))))....(.((((((...(((......)))...))))))).............)))..)))).. ( -31.40)
>DroEre_CAF1 7691 110 + 1
UCCCGUUUUCCCACAAACAUGGUGAGUACGGGCGGAUUAUUGCCGCCUUUUUCGAGUUGUUUUGGCCAAAAGCGGCAGUGGCAACCGAGCAACAACACCCACACUCCACA
.(((((.((((((......))).))).))))).(((.(((((((((.(((((((((....)))))..)))))))))))))((......))..............)))... ( -32.70)
>consensus
UCCCGUUUUCCCACAAACAUGGUGAGUACUGGCGGAUUAUUGCCGCCAGUUUCGAGUUGUUUUGGCCAAAAGCGGCAGUGGCAACCAAACAGCAACACCCACACACCACA
...................(((((.((((((((((.......)))))))).....(((((((..(((......))).(.(....))))))))).......)).))))).. (-27.60 = -27.35 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:55 2006