Locus 5889

Sequence ID X_DroMel_CAF1
Location 15,160,049 – 15,160,143
Length 94
Max. P 0.739335
window9561

overview

Window 1

Location 15,160,049 – 15,160,143
Length 94
Sequences 4
Columns 99
Reading direction reverse
Mean pairwise identity 78.25
Mean single sequence MFE -24.20
Consensus MFE -15.17
Energy contribution -17.86
Covariance contribution 2.69
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.45
SVM RNA-class probability 0.739335
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 15160049 94 - 22224390
UAGUGCA---GCAUUCCGUCCCGCUCAUUUUGGCUAACAAUCCC--CCAUUGCGUUGGCCGAAAGCUGGACAUAUGCACUAUCAAUUGCAUAAACUGUG
....(((---(......((((.(((...((((((((((......--.......))))))))))))).)))).((((((........))))))..)))). ( -30.62)
>DroSec_CAF1 2022 95 - 1
CAGUGCA---GCAUUCCGUCUCGCUCAUUUUGGCUAACAAUCCCU-CCACUGCGUUGGCCAAAAGCUGGACAUAUGCACUACCUAUUGCAUAAACUGUG
....(((---(......((((.(((...((((((((((.......-.......))))))))))))).)))).((((((........))))))..)))). ( -28.94)
>DroEre_CAF1 3021 78 - 1
---------------------CGCUCGUUUUGGCGUACAAUCCCGAACAAUGCCUUGCCCGAAAGCUGUACAUAUGCACUGCCUAUUGCAUAAACUGUG
---------------------.(((((....(((((.............))))).....)))..))..((((((((((........))))))...)))) ( -12.82)
>DroYak_CAF1 2080 97 - 1
CAGUGCAUCCGCAUCCCGUCUCGCUCAUUUUGGCGAACAAUCCCGA--AAUGCCUCGCCCGAAAGCUGGACAUAUGCACUACCUAUUGCAUAAACUGUG
((((((....)).....((((.(((((((((((.((....))))))--))))..((....)).))).)))).((((((........)))))).)))).. ( -24.40)
>consensus
CAGUGCA___GCAUUCCGUCUCGCUCAUUUUGGCGAACAAUCCCG_CCAAUGCCUUGCCCGAAAGCUGGACAUAUGCACUACCUAUUGCAUAAACUGUG
.................((((.(((...((((((((((...............))))))))))))).)))).((((((........))))))....... (-15.17 = -17.86 +   2.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:54 2006